Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02680 ATGGAAGAGAGAAATGATGGTGAAAAACTTGATGATGTTATTTTACCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTGTTGGTTTTTATCTAAAGAGAAAGGTTCAACAAAGGCCTCTTTCTATTGAGCTCATCAAACAGCTTGATATCTATAAATATGATCCTTGGGATCTTCCAAAGTTTGCTAGTACTGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGATTCTGGAAAGCTACAGGGACAGATAGACCTATCTATTCCTCAGAAGGTTCAAAGTGCATTGGCCTTAAGAAATCATTAGTCTTTTACAAAGGAAGAGCTGCTAAAGGGATCAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTTTCACTGATCCACTTTCACCAAAGAAGTACTTGGAGAAAACCATTCCAGCTAATGAATCATGGGCTATCTGCAGAATATTCAAGAAAACCAATTCTATAGCTCAAAGAGCTTTGTCTCAATCTTGGGTTTCTTCACTTTCTGAAACAAGAACCTCTAATATGCTAACAAAAAATCAAGAAATAACTCAATTTTGTTCCGACAACAACATGTCATTGACAAAGAAAACTACCTTAGCCAACAACTTTTGCACTAACAACAATGATAACCAAAATTTTGATGTTGATGTTACCCCTTATAAATCCAATATTAATAATCCATTACTACACAAAGCCTTTGATCACTTACCTATTTCAAATGAAGATCTTAATGCAAGCTTAATATTCTCACCATCTCAACTTCAAACATCTAATAACACCAATTTTATTGCCAAATCTACAATGGATGTTTCATCAATGTTGTTGAATATGTCATCATCCTCAATGTTTGGTGATGAGGTTACAACAACAAATTTGATGAATGGTGGGTTGCAAGAGCAATTTAGTGACTACTCATTCCCATATGGTAACCAATATGAAAATAATAATGCATTGGTAAAGGTACCTTATAATGTGAATGTGCCTCGTATTGATCATGAGCAAGAATTGATGCATTTCAATATTGGTGATGCATGGAAGTCAAATTTGCTTTGGGATACTTCATTTTGTCCTTGTGATGTTCCCTCTAGTTATTATTCTACAACAACCAAGTGTTACACTTAA 1188 0.3527 MEERNDGEKLDDVILPGFRFHPTDEELVGFYLKRKVQQRPLSIELIKQLDIYKYDPWDLPKFASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSFTDPLSPKKYLEKTIPANESWAICRIFKKTNSIAQRALSQSWVSSLSETRTSNMLTKNQEITQFCSDNNMSLTKKTTLANNFCTNNNDNQNFDVDVTPYKSNINNPLLHKAFDHLPISNEDLNASLIFSPSQLQTSNNTNFIAKSTMDVSSMLLNMSSSSMFGDEVTTTNLMNGGLQEQFSDYSFPYGNQYENNNALVKVPYNVNVPRIDHEQELMHFNIGDAWKSNLLWDTSFCPCDVPSSYYSTTTKCYT 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02680 395 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Trre9g02680 395 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Trre9g02680 395 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Trre9g02680 395 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 241 - -
Trre9g02680 395 FunFam NAC domain-containing protein 35 23 175 - -
Trre9g02680 395 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02680 Trre-Chr9 33721006 33723491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02680 2 322 NAC Transcription Factor Family AT1G26870 55.000 1.93e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre9g02680 NAM 4.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02680 - - gmx:100783995 489.96