Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02650 ATGGATTTGGAAGGTGATCATCAAAATAATGGAATCCGAAGCAGACCCAATTTCCCTCTTCAGCTTTTAGAGAAAAAAAACAACAACATCCTAGATGTCTCCGAAGAACAACAACCTTGTTCAACCACCGCAGACGACGGCTCAGGAACCATCGTCACTTCGGACAACCAGAAAAAGCCAGCGCCGAAGCGGGCTTCGACAAAAGACCGGCACACGAAAGTGGATGGACGAGGCCGCCGGATCCGCATGCCAGCGGCCTGTGCAGCCAGAGTGTTCCAGCTCACGCGTGAGCTGGGACATAAATCTGACGGTGAGACGATCGAGTGGCTACTTCAACAGGCAGAGCCAGCCGTCATCGCCGCCACCGGTACAGGGACAATTCCGGCAAACTTCACTTCTCTTAACATCTCTCTTAGAAGCTCAGGTTCAACCATGTCAGCGCCATCACACTATTTTAGAGGTAACTACTTCAACCCTAGCTCGTTCTCAACTGCCGCAGCCGCCGCGGCTCAGGTTAGAAACCGAGCTGAATGGGATAGAACTATGAACATGAATATGAACGTTACAGCTGATGATTCTAGAAGGAATAACAATATGATGGAGAATCCTTCATCTTTATCAGCAATTTTGAATTTTAACAACGTGCAAAATGCTATTCTACAAGCAAAACAAGAGCTCCGGGAAGAAAACACCGCCTCTGGCGGCGGAGGTGGTGGAGGATTTGAATTATTGGGTTCTGATTCAGATGGAAGCATAGGAAGGAAAAGAAGGTCAGAGCAAGAATTGTTATCACAAAATATGGGAAGTTATTTGTTACAATCAAATGTGGGGTCACTTCCTTCAAGTCATGCTTCCAATACGGCAGCGTTTTGGATGGTAACAGGTAATGGTAACCAAGGTGTTAATGGTGGTAGTAATGGAAATGATCCAATTTGGGCAATTCCTTCGGTTGGGAATAATGGTTTGTATAGAGGAGCTATGCCTTCTAATGGAATTCATTTCATGAATTTTGCTTCTCCAATGAATCTTATGCCTGGAAGTCAATTAGGTTCTGGAATTGTCGGGAGCGGTGGAGGTGGTGGTGGTATTATGGCCGAAAGTAACTTAAGTATGCTTTCGGCCATGAATGCGTATAGGCAGATTCAGACGAATGGCATGTCTGAGTCTACCGGGCAACATCATGGAGGAGGAGATGATGGGCATGATTCAAGCAGTCAACAATCCTAA 1227 0.4621 MDLEGDHQNNGIRSRPNFPLQLLEKKNNNILDVSEEQQPCSTTADDGSGTIVTSDNQKKPAPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSSFSTAAAAAAQVRNRAEWDRTMNMNMNVTADDSRRNNNMMENPSSLSAILNFNNVQNAILQAKQELREENTASGGGGGGGFELLGSDSDGSIGRKRRSEQELLSQNMGSYLLQSNVGSLPSSHASNTAAFWMVTGNGNQGVNGGSNGNDPIWAIPSVGNNGLYRGAMPSNGIHFMNFASPMNLMPGSQLGSGIVGSGGGGGGIMAESNLSMLSAMNAYRQIQTNGMSESTGQHHGGGDDGHDSSSQQS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02650 408 MobiDBLite consensus disorder prediction 386 408 - -
Trre9g02650 408 Pfam TCP family transcription factor 66 213 IPR017887 -
Trre9g02650 408 Coils Coil 212 232 - -
Trre9g02650 408 MobiDBLite consensus disorder prediction 35 60 - -
Trre9g02650 408 MobiDBLite consensus disorder prediction 35 74 - -
Trre9g02650 408 MobiDBLite consensus disorder prediction 227 259 - -
Trre9g02650 408 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 54 406 IPR005333 GO:0003700
Trre9g02650 408 ProSiteProfiles TCP domain profile. 67 121 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02650 Trre-Chr9 33004330 33005556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02650 261 400 TCP Transcription Factor Family AT1G69690 34.395 1.54e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre9g02650 TCP 2.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02650 - - vum:124821453 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02650 9 33004330 33005556 Trre9g02650 9 33004330 33005556 ECH
Trre9g02650 9 33004330 33005556 Trre15g04196 15 52597320 52598657 PCT