Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02644 ATGTGGAGTTTAGGATTCAATGTTTTGATTAGGGTTTTTATTTTGCTCTCATTTACATCTTTCATTTCTTCTCTCGAACCCCAACTCGGATCAACCCGCGTCGTCTTTCAGACAAATTATGGAGATATTGAATTTGGTTTCTATCCAACAGTTGCACCAAAAACTGTTGACCACATTTTTAAGCTTGTGAGACTTGGAGGCTATAACACCAATCATTTCTTTCGGGTGGATAAGGGATTTGTAGCCCAAGTAGCTGATGTTGCTAGTGGAAGATCTGCTCCCATGAACGAGGAACAAAGAAGAGAAGCTGAAAAGACCGTTGTTGGTGAATTTAGTGATGTCAAACATGTTCGGGGTATTCTTTCTATGGGAAGGCATGACGATCCAGACAGTGGTGCATCCTCTTTTTCAATGTTACTTGGAAATTCTCCTCATCTTGATGGGAAGTATGCAATATTTGGAAAAGTTACTAAAGGTGACGATACATTGGCAAAGCTTGAGCAACTACCTACCCGTAAAGAGGGAATATTTGTCATGCCAACGGAGCGCATCACCATCCTCTCATCATATTACTATGACACGGAGACAGAAAAATGTGAGCAAGACAGATCGATTTTGAAGCGCAGGTTAGCTGCATCAGCCATTGAAGTTGAAAGACAGAGAATGAAATGCTTCCCCTGA 681 0.4126 MWSLGFNVLIRVFILLSFTSFISSLEPQLGSTRVVFQTNYGDIEFGFYPTVAPKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVADVASGRSAPMNEEQRREAEKTVVGEFSDVKHVRGILSMGRHDDPDSGASSFSMLLGNSPHLDGKYAIFGKVTKGDDTLAKLEQLPTRKEGIFVMPTERITILSSYYYDTETEKCEQDRSILKRRLAASAIEVERQRMKCFP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02644 226 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 191 IPR002130 GO:0000413|GO:0003755
Trre9g02644 226 CDD cyclophilin 35 188 - -
Trre9g02644 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Trre9g02644 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Trre9g02644 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Trre9g02644 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Trre9g02644 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 10 226 IPR044233 -
Trre9g02644 226 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 188 IPR002130 GO:0000413|GO:0003755
Trre9g02644 226 Gene3D - 21 198 IPR029000 -
Trre9g02644 226 SUPERFAMILY Cyclophilin-like 27 193 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02644 Trre-Chr9 32814594 32824844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02644 34 189 U-box Gene Family AT5G67530 28.049 9.48e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02644 - - gmx:100819238 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02644 9 32814594 32824844 Trre9g02644 9 32814594 32824844 ECH