Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02643 ATGGCTGCAGCCTCTAATCAATCTTCATCCACTTCAGAAAATATTTCACACAAAGTTTCTGAAGAAGAGAATGACGTCAACAAAAACGAGTTGACAATGAAGGGAAAGGAAGTTATAATATCCGAACCTTCAAAAAGCAATACCAATTTGTTTCTTGATTTCGTTAAGCTCTCTGATGATGATTTGATTCCTATATCAAATGTGAAGGAATATGATTTTTTCACCCCCTCGAAAGACTTGGGGGAGAGTTCATCTTTATTACCTTGGGCTAATAATAAGTCCAATAATGAAGAGAACACAAAAGATAAATCTTTTGTTTCGAGTAGTACTTTCTCTTGCAACTTTTGCAAGAGGCGGTTTTCTTCTTCACAAGCTTTAGGAGGGCATCAAAATGCTCATAAGCCTGAACGCGCACTTGCAAAGCATCGCCAAGAGATTCAAAATGGTTTTGGAACCCCTCATTTTCCTTTTCCTTACTACACAAGTTATCCACGTCCTTCTTCATTTGGATCTTATAAGAAAGCACTTGGAATTAGGATGGACTCCATGATTCACAAGCCAGGCTATTCTTGGATTCCGCCTCCTCGTTATAAGTTCGGTTCGACTCCTAAGTGGACACCGATGCAAGAGATGAGAATCTTTTCTTCATTTGATAGATTGAAGATTGAGAGTCTTAATGCAAATAAAGAAAACAGTGCAACTCCAATTTCGACGAATAATAAGATGAAATTAGATGTTGGAGAGTCTTCGATAAATGTTGATACGAAGTCAAAGTCAAAGTCAAACGTAGACAAATCAACTGTAGTTGTCAGGGGTAGTAATCATGATACCGATAAGGAAGAAGAAGCCTCCGATTCTGAATCTACAAACCTTGATTTGTCGCTTAAGCTTTAA 894 0.3781 MAAASNQSSSTSENISHKVSEEENDVNKNELTMKGKEVIISEPSKSNTNLFLDFVKLSDDDLIPISNVKEYDFFTPSKDLGESSSLLPWANNKSNNEENTKDKSFVSSSTFSCNFCKRRFSSSQALGGHQNAHKPERALAKHRQEIQNGFGTPHFPFPYYTSYPRPSSFGSYKKALGIRMDSMIHKPGYSWIPPPRYKFGSTPKWTPMQEMRIFSSFDRLKIESLNANKENSATPISTNNKMKLDVGESSINVDTKSKSKSNVDKSTVVVRGSNHDTDKEEEASDSESTNLDLSLKL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02643 297 MobiDBLite consensus disorder prediction 1 15 - -
Trre9g02643 297 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Trre9g02643 297 SUPERFAMILY beta-beta-alpha zinc fingers 109 138 IPR036236 -
Trre9g02643 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Trre9g02643 297 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 297 IPR044246 GO:0009788
Trre9g02643 297 MobiDBLite consensus disorder prediction 249 297 - -
Trre9g02643 297 MobiDBLite consensus disorder prediction 16 30 - -
Trre9g02643 297 MobiDBLite consensus disorder prediction 271 286 - -
Trre9g02643 297 MobiDBLite consensus disorder prediction 249 270 - -
Trre9g02643 297 MobiDBLite consensus disorder prediction 1 30 - -
Trre9g02643 297 Gene3D Classic Zinc Finger 91 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02643 Trre-Chr9 32797051 32797944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02643 111 297 C2H2 Transcription Factor Family AT5G10970 33.333 8.04e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g02643 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02643 - - tpra:123886838 414.461