Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02636 ATGTCTAGCAGAAGATCTCGTTCTAGACAATCTGGTGGTTCCTCTGAAATCACTGATGCTCAAATAACTGATCTCATCTCTAAGTTACAACAACTCATCCCCGAACTTCGCGCTAGTCGCTCCAACAAGGTTTCAGCTACTAAGGTATTGCAAGAGACTTGCAACTACATAAAAAACTTGCATAGAGAGGTTGATGATTTAAGTGACCGATTGTCACAACTTTTGGCTACTACAGATTCCAACAGTGCTCAAGCAGCTATTATTAGGAGCTTACTTATGTAA 282 0.4043 MSSRRSRSRQSGGSSEITDAQITDLISKLQQLIPELRASRSNKVSATKVLQETCNYIKNLHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02636 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Trre9g02636 93 CDD bHLH_AtPRE_like 17 77 - -
Trre9g02636 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Trre9g02636 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Trre9g02636 93 Coils Coil 57 77 - -
Trre9g02636 93 Gene3D - 4 90 IPR036638 GO:0046983
Trre9g02636 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Trre9g02636 93 FunFam Transcription factor ILI6 7 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02636 Trre-Chr9 32587535 32588281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02636 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 68.085 1.51e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g02636 HLH 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02636 - - gmx:100791371 154.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02636 9 32587535 32588281 Trre9g02636 9 32587535 32588281 ECH
Trre9g02636 9 32587535 32588281 Trre5g01671 5 12074302 12075646 ECH
Trre9g02636 9 32587535 32588281 Trre13g00164 13 1295839 1296838 ECH