Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02609 ATGTTACAAACTCCTCATCACCATGATGAACATCATCATCATCATCCACCACCTTCACTCAACTCAATTCTACCTCAAGATTATCATGGAGGACCATCATTTCTAGGAAAGAGATCTATGTCATTTTCATCAGGAATTGAGCTAGGAGAAGAAGCCAATATTGCTGAAGAAGATTTATCTGATGATGGATCACAAGCTGGTGAGAAAAAGAGGAGACTTAACATGGAACAAGTGAAGACACTTGAGAAAAGTTTTGAGCTTGGTAATAAGCTTGAGCCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTAAATTTGCAGCCAAGACAAGTTGCTATATGGTTTCAAAACAGGAGAGCAAGATGGAAGACAAAGCAGTTAGAAAAAGACTATGATGTCCTTAAAAGACAATATGATGCTGTTAAGTTTGATAATGATTCACTTCAAGCTCAAAACCAAAAACTTCAAGCAGAGATATTGGCATTGAAAAATAGAGAACCAACAGAATCAATCAATCTCAACAAAGAAACAGAAGGATCAAGCAGCAATAGAAGTGAAAATAGTTCAGATATCAAGTTAGATATCTCAAGAACACCAGCTAGTGATAGTCCATTATCTACACACCATCATACAACAAGCAGAACCTTCTTTCCACCTTCTTCAAGGCCACAAGGTGGAATTGCTCAACTTTTTCAAACTACTTCAAGGCCAGAACTTCAATGTCAAAAAATTGATCAATTGGTCAAAGAAGAAAGTTTAAGCAACATGTTTTGTGGTATGGATGATCAAGCTGGATTTTGGCCATGGTTGGAGCAACAACATTTCAATTGA 828 0.3732 MLQTPHHHDEHHHHHPPPSLNSILPQDYHGGPSFLGKRSMSFSSGIELGEEANIAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAVKFDNDSLQAQNQKLQAEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISRTPASDSPLSTHHHTTSRTFFPPSSRPQGGIAQLFQTTSRPELQCQKIDQLVKEESLSNMFCGMDDQAGFWPWLEQQHFN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02609 275 MobiDBLite consensus disorder prediction 53 74 - -
Trre9g02609 275 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Trre9g02609 275 Pfam Homeobox associated leucine zipper 124 164 IPR003106 GO:0006355|GO:0043565
Trre9g02609 275 SMART HOX_1 67 128 IPR001356 GO:0003677
Trre9g02609 275 SUPERFAMILY Homeodomain-like 62 126 IPR009057 -
Trre9g02609 275 Gene3D - 61 130 - -
Trre9g02609 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 47 243 IPR045224 GO:0003700
Trre9g02609 275 FunFam Homeobox-leucine zipper protein ATHB-13 61 128 - -
Trre9g02609 275 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Trre9g02609 275 Coils Coil 116 164 - -
Trre9g02609 275 MobiDBLite consensus disorder prediction 169 226 - -
Trre9g02609 275 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Trre9g02609 275 CDD homeodomain 69 125 IPR001356 GO:0003677
Trre9g02609 275 MobiDBLite consensus disorder prediction 172 226 - -
Trre9g02609 275 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02609 Trre-Chr9 32196352 32198366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02609 1 275 Homeobox Transcription Factor Family AT1G69780 64.014 2.02e-112 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre9g02609 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02609 K09338 - gmx:100808033 444.506