Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02599 ATGTCTGAGAGAATTTTCCTTCAAAATGCTGAAGACACCAACCTCAAGAACAAAATGGAGGAGGTGCCAAAGTTGATACCTAAGAAGGAACCGGTGGCAATACCACAAACAACTAAATCTAATGATGAGAATTTGCTTACTTCTAGGCCTGGCATTCAGTCCAAGTCCATTTCCAAATCATTGGAGATTGGTGAACAAAGTTCATCCCAGAATCCTTTATCTCAAAACACTATAGGTGAACCTTTACCTCAGCGAGAAGTGAGGGAATTTCGTTGTCGTTTCTGTTACGACACATTCTCCACTTCTCAAGCACTTGGAGGACATCAAAATGCCCATAAGCTTGAGCGTTCCATCATAAAAATGGAACAACAAAGAAAAGAGGATCAAATAAATGCAATCCTATGGTCTAGGTATAATAATCGACCATACCATTATGCATTTCCATGCCCTATACATAATGGTAACATGCACCACCCAATTAGCGCTCCTATGAACAATACTTGGGCTATTGGTTCTCCTTCTAGTGGCTATGGAGGGTTGTATATGTCAAATACACCCGAAATATCACCTCGATTTGTGATGCAAATGCCAAATTCATCCATCATAACACCGCAATTTGGAATGACTAATTATTGTGGTGGAAATCAAAATGTTGCATTTCCAATTCAACAACGACCAAACACTTTAAGTTTGGGACATTTGGCTCAAGCAAATCAAACCCCTTCAATTGCTGAAGGTGCTGAAAGAAATTGCAATTCTCAAAATGAGTTGCAAACTCTTCCTTTGCTGTCTCGTGATCTTACTGGAGAAGGATCAATTCAAGCCAATGTGTCCTCGTCATCAACACAATCAACCTTAGAGGAAATTAACTTGGATCTCACTCTTTAA 888 0.3953 MSERIFLQNAEDTNLKNKMEEVPKLIPKKEPVAIPQTTKSNDENLLTSRPGIQSKSISKSLEIGEQSSSQNPLSQNTIGEPLPQREVREFRCRFCYDTFSTSQALGGHQNAHKLERSIIKMEQQRKEDQINAILWSRYNNRPYHYAFPCPIHNGNMHHPISAPMNNTWAIGSPSSGYGGLYMSNTPEISPRFVMQMPNSSIITPQFGMTNYCGGNQNVAFPIQQRPNTLSLGHLAQANQTPSIAEGAERNCNSQNELQTLPLLSRDLTGEGSIQANVSSSSTQSTLEEINLDLTL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02599 295 MobiDBLite consensus disorder prediction 34 52 - -
Trre9g02599 295 Coils Coil 111 131 - -
Trre9g02599 295 SUPERFAMILY beta-beta-alpha zinc fingers 88 117 IPR036236 -
Trre9g02599 295 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 55 294 IPR044246 GO:0009788
Trre9g02599 295 MobiDBLite consensus disorder prediction 27 52 - -
Trre9g02599 295 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Trre9g02599 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Trre9g02599 295 Gene3D Classic Zinc Finger 66 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02599 Trre-Chr9 31902506 31903393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02599 33 142 C2H2 Transcription Factor Family AT5G01860 38.182 2.42e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02599 - - tpra:123892015 308.916