Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02593 ATGGGGAAAGGAAGAAGTCCTGGGAAATGGATCAAGAACTTACTCTATGGGAAGAAATCATCGTCTAACTCGAAGTCTAGTTCATCGAAAAAGAATGACATTTTTAAATCGTCGAGTAACAAGGATCCGTTGGGATCTTCTGAGTTAACTGTGTCAAATCCAATTCCAACTATGGATTCTTTGATGATATCCCCGCCGATTTCTGGATCTAATGCTGCTAAAGGAGTGGTTTCAGAAAAGGAAGTAATTAACGGGCCATCTCGTGAGCGGGAGATTCTCTCAAATGGAGACGGAGAGGGTCGTGCAGAAGCTGTTGCTAATTTTGCATCTCAAGATGATCGTGAGACAGTCAGGCTTACAGAAGCAGCTATTAAACTTCAATCTGCTTGCAGAGGCTATCAGGCTCGTCGGGAATTTCAAAGACTCAAAAGTATCACACAGCTGCAAGCTCTTATTCGTGGTCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATATTGTGTGAAGAAAATTGTTAAGTTCCAAGCATTGGCTCGTGGTTACAATGTTAGGCGTTCTGATATTGGGCTTGAGGTCCTAAAAATTCGTAAGGATACTCAACTTTCAAAATCTACTGGCGTAGTTCCATCTACAGAGGCAGGGAAGCTGTCAGAAAATGTCTTTGTTTGGAAGCTACTGGCTTCATCTCCCCATGCTTTTCCTCTATCTTTCAATACTGATCTTGGAGAACCTTACTTGGCTTGGAAGTGGCTTGACCGATGGACAAGGTCACACTTTTGGGCATCTCTTCCTAAATTGAAGAAACTTGACTCGGTGTCTGATGAAAAAAATATCAGTTGTCAAACAGTTGAAAAGGGACAAGTTAAAAGGAATACCCGGAAGTCTCCTGCCGTGAAAGCTGATGATGGCTCAAGTTCAGGTTCTAATAAATATAAACAGCGTCCCAAAAAGGATTCAAATCACTCATTGGTTTCAGCTCAGGAACACCCAAAGACAGAAATTGAGAAAAGTAGTCTAAAGAAAACTTGCATGCAGAATGTTTCAGACAGATCTGAGGCTGTTAACGAGAAAAGAAAACAAAGCTCTAGGACAACTACAGATCATAATGTTACAGATGTCGCAGAGCGGGGGCCAAATACCACTTCAGAGAAAATGAAAGGTACAATGGTGTCAAAGTCAAAGTCAGAAGAGTGTTATCCTGAGAAAGTTCTTGGACAGAAAATACAAGAAGAGAATAATGATAAGTCGAAGAGCTTAAATGGTGGTGCCAAGGAAGAGAAAGGTATTGGACAGAAAACACTAGAAGAGAATAACGATAAGCCAAAGAAGAGCTTTAATGGAAGTGCCAAAGAAGAGAAAGGTCTTGGACAAAAAGCACTAGAAGAGAATAATGATAAACCAAAGAAGAGCTTAAATGGAGGTGCTAAAGAAGATAAAGGTCTTGGACAGAAAGCACTAGAAGAGAATAGTGATAAGCCAAAAAAGAGCTTAAATGGCAGTGCCAAAGAAGTGAAATGTCTTGGACAGAAAGCACTAGAAGAGAATAATGATAAGCCAAAGAAGAGCTTAAATGGCGGTGCCAAAGAAGGGAAAGGTCTTGAACAGAAAGCTCTAGAAGAGAATAATGATAAGCCAAAGAAGAGCTTAAGTGGCGGTGTCAAAGAAGAGAAAAGTCTTGGAAAGAAAGCACCAGAAGAGAAAGGTCATAATGATCCCAGTGCTGTCTTACAGACTAGTGTGAAGAATGTAGGAGATGAAAAAATAGGAGTTAGCGAAGACTTAAATGGCAGTGAGAAAATCATCAGCAACAATTACCAAAGAAGAGCTTCACTACCTGCTAATTTTAATGATCAAGAAAATGAGTTACATAACACTCCAAGATTGCCGAGTTATATGGCTCCTACTGAATCAGCAAAAGCTAGGCTAAGGGGACAAGGCTCCCCAAGATTTGCTACTGATATATTAGACAAAAACAGTTTAACCAGGAGGCATTCACTTTCATCTTCTATTAACAGCAAGTCAGGTTCTTTTTCCCCAAGAGCAGAAAAGCTGTTAACTTTGAGCGGAAGAGGAGTTGCAAGGACTGATAAATCTCTGTCATCTTCAAGGGACAAATCTCTGTCATCTTCAAGGGATGGGACTGATAAGATGACACAACCTCAGTGGAGAAGGTGA 2175 0.406 MGKGRSPGKWIKNLLYGKKSSSNSKSSSSKKNDIFKSSSNKDPLGSSELTVSNPIPTMDSLMISPPISGSNAAKGVVSEKEVINGPSREREILSNGDGEGRAEAVANFASQDDRETVRLTEAAIKLQSACRGYQARREFQRLKSITQLQALIRGHLVRRQAVSALYCVKKIVKFQALARGYNVRRSDIGLEVLKIRKDTQLSKSTGVVPSTEAGKLSENVFVWKLLASSPHAFPLSFNTDLGEPYLAWKWLDRWTRSHFWASLPKLKKLDSVSDEKNISCQTVEKGQVKRNTRKSPAVKADDGSSSGSNKYKQRPKKDSNHSLVSAQEHPKTEIEKSSLKKTCMQNVSDRSEAVNEKRKQSSRTTTDHNVTDVAERGPNTTSEKMKGTMVSKSKSEECYPEKVLGQKIQEENNDKSKSLNGGAKEEKGIGQKTLEENNDKPKKSFNGSAKEEKGLGQKALEENNDKPKKSLNGGAKEDKGLGQKALEENSDKPKKSLNGSAKEVKCLGQKALEENNDKPKKSLNGGAKEGKGLEQKALEENNDKPKKSLSGGVKEEKSLGKKAPEEKGHNDPSAVLQTSVKNVGDEKIGVSEDLNGSEKIISNNYQRRASLPANFNDQENELHNTPRLPSYMAPTESAKARLRGQGSPRFATDILDKNSLTRRHSLSSSINSKSGSFSPRAEKLLTLSGRGVARTDKSLSSSRDKSLSSSRDGTDKMTQPQWRR 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02593 724 MobiDBLite consensus disorder prediction 702 724 - -
Trre9g02593 724 ProSiteProfiles IQ motif profile. 141 170 IPR000048 GO:0005515
Trre9g02593 724 MobiDBLite consensus disorder prediction 351 365 - -
Trre9g02593 724 Pfam IQ calmodulin-binding motif 143 160 IPR000048 GO:0005515
Trre9g02593 724 Pfam IQ calmodulin-binding motif 169 185 IPR000048 GO:0005515
Trre9g02593 724 Pfam IQ calmodulin-binding motif 120 140 IPR000048 GO:0005515
Trre9g02593 724 MobiDBLite consensus disorder prediction 283 598 - -
Trre9g02593 724 SMART iq_5 166 188 IPR000048 GO:0005515
Trre9g02593 724 SMART iq_5 141 162 IPR000048 GO:0005515
Trre9g02593 724 SMART iq_5 118 140 IPR000048 GO:0005515
Trre9g02593 724 Pfam Protein of unknown function (DUF4005) 618 689 IPR025064 -
Trre9g02593 724 MobiDBLite consensus disorder prediction 661 681 - -
Trre9g02593 724 ProSiteProfiles IQ motif profile. 119 147 IPR000048 GO:0005515
Trre9g02593 724 MobiDBLite consensus disorder prediction 16 53 - -
Trre9g02593 724 MobiDBLite consensus disorder prediction 1 53 - -
Trre9g02593 724 MobiDBLite consensus disorder prediction 366 388 - -
Trre9g02593 724 MobiDBLite consensus disorder prediction 389 499 - -
Trre9g02593 724 MobiDBLite consensus disorder prediction 617 724 - -
Trre9g02593 724 Gene3D - 116 166 - -
Trre9g02593 724 MobiDBLite consensus disorder prediction 507 569 - -
Trre9g02593 724 MobiDBLite consensus disorder prediction 311 338 - -
Trre9g02593 724 Coils Coil 723 724 - -
Trre9g02593 724 PANTHER IQ-DOMAIN 5-RELATED 1 672 - -
Trre9g02593 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 161 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02593 Trre-Chr9 31474829 31480255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02593 606 724 IQD Protein Family AT1G14380 46.721 8.76e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02593 - - tpra:123907401 1190.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02593 9 31474829 31480255 Trre9g02593 9 31474829 31480255 ECH
Trre9g02593 9 31474829 31480255 Trre15g04176 15 52365253 52368654 ECH
Trre9g02593 9 31474829 31480255 Trre15g04176 15 52365253 52368654 PCT