Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02584 ATGAAGATATTACAGGCACAGTTCTATACAACCACTACAAACCCATTTTCAGTCCCAACTCACTCTTTCATCAATCCCAAAATACCCATTCCTTTAAGGCATGTGGGTCCCACTTTCTCCTCCACTCTCTCACAATTCTCTATCACATGTCGCCGCCCATATCCTTTCCAACCCAAACCATTCCCCCCACCACCACCTCAACCTCCTCCTTCATCATCTTCTTCAGGAAAATTGCCAGCAAAGGTTTATGTTGGTCATTCAGTTTACAAAGCAAAAGCTGTACTCACTGTGTCTCCTAGACCTCCACTATTCACTACATTGAAGTCAGGGGCATTCGAGGTATGTAGAGAAGGTTGTGTCCTGTTACAGTTTGCTCCTGCTACTGTTGCGTATCAATATGATTGGAACAGAAAACAGGTATTTTCGCTATCTGTGGCTGAAATAGGAAATCTAATAAGCCTTGGTCCAAGGGAGTCTTATGAATTTTTTCATGATCCTTTTATTGGAAAAAGTGATGAAGGTAAAGTGAGAAAATATTTGAAGGTGGAGCCACTTCACGACCGTTCTGGTCACATGTTTAACATAAGTGTTCAAAACGAGCTCGAGAACATAAACGAAAACATATTAATCCCTGTCACAAAAGGAGAATTTGCAGTTTTCGATTCACTTTTCAATTTTATCATGCCATGCCTTTTAGGTTGGACTGCCTTTGCCAACTCCATAAAGCCAGAAGTATATAATAGAAATCCAAGAGATGAAGATTTTGGATGGAACAATTTCACCAGAATAATCTGA 795 0.4038 MKILQAQFYTTTTNPFSVPTHSFINPKIPIPLRHVGPTFSSTLSQFSITCRRPYPFQPKPFPPPPPQPPPSSSSSGKLPAKVYVGHSVYKAKAVLTVSPRPPLFTTLKSGAFEVCREGCVLLQFAPATVAYQYDWNRKQVFSLSVAEIGNLISLGPRESYEFFHDPFIGKSDEGKVRKYLKVEPLHDRSGHMFNISVQNELENINENILIPVTKGEFAVFDSLFNFIMPCLLGWTAFANSIKPEVYNRNPRDEDFGWNNFTRII 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02584 264 MobiDBLite consensus disorder prediction 57 73 - -
Trre9g02584 264 Pfam Whirly transcription factor 88 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre9g02584 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 70 254 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre9g02584 264 Gene3D Transcriptional Coactivator Pc4; Chain A 73 247 IPR009044 GO:0003677|GO:0006355
Trre9g02584 264 MobiDBLite consensus disorder prediction 57 77 - -
Trre9g02584 264 SUPERFAMILY ssDNA-binding transcriptional regulator domain 81 251 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02584 Trre-Chr9 31352110 31355776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02584 12 258 Whirly Transcription Factor Family AT1G14410 53.968 1.22e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Trre9g02584 Whirly 1e-53 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02584 K26559 - pcin:129310571 253.447