Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02583 ATGAAGATATTACAGGCACAGTTCTATACAACCACTACAAACCCATTTTCAGTCCCAACTCACTCTTTCATCAATCCCAAAATACCCATTCCTTTAAGGCATGTGGGTCCCACTTTCTCCTCCACTCTCTCACAATTCTCTATCACATGTCGCCGCCCATATCCTTTCCAACCCAAACCATTCCCCCCACCACCACCTCAACCTCCTCCTTCATCATCTTCTTCAGTAGGAAAATTGCCAGCAAAGGTTTATGTTGGTCATTCAGTTTACAAAGCAAAAGCTGTACTCACTGTGTCTCCTAGACCTCCACTATTCACTACATTGAAGTCAGGGGCATTCGAGGTATGTAGAGAAGGTTGTGTCCTGTTACAGTTTGCTCCTGCTACTGTTGCGTATCAATATGATTGGAACAGAAAACAGGTATTTTCGCTATCTGTGGCTGAAATAGGAAATCTAATAAGCCTTGGTCCAAGGGAGTCTTATGAATTTTTTCATGATCCTTTTATTGGAAAAAGTGATGAAGGTAAAGTGAGAAAATATTTGAAGGTGGAGCCACTTCACGACCGTTCTGGTCACATGTTTAACATAAGTGTTCAAAACGAGCTCGAGAACATAAACGAAAACATATTAATCCCTGTCACAAAAGGAGAATTTGCAGTTTTCGATTCACTTTTCAATTTTATCATGCCATGCCTTTTAGGTTGGACTGCCTTTGCCAACTCCATAAAGCCAGAAGTATATAATAGAAATCCAAGAGATGAAGATTTTGGATGGAACAATTTCACCAGAATAATCTGA 798 0.4035 MKILQAQFYTTTTNPFSVPTHSFINPKIPIPLRHVGPTFSSTLSQFSITCRRPYPFQPKPFPPPPPQPPPSSSSSVGKLPAKVYVGHSVYKAKAVLTVSPRPPLFTTLKSGAFEVCREGCVLLQFAPATVAYQYDWNRKQVFSLSVAEIGNLISLGPRESYEFFHDPFIGKSDEGKVRKYLKVEPLHDRSGHMFNISVQNELENINENILIPVTKGEFAVFDSLFNFIMPCLLGWTAFANSIKPEVYNRNPRDEDFGWNNFTRII 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02583 265 MobiDBLite consensus disorder prediction 57 73 - -
Trre9g02583 265 Pfam Whirly transcription factor 89 223 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre9g02583 265 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 71 255 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre9g02583 265 MobiDBLite consensus disorder prediction 57 77 - -
Trre9g02583 265 Gene3D Transcriptional Coactivator Pc4; Chain A 74 248 IPR009044 GO:0003677|GO:0006355
Trre9g02583 265 SUPERFAMILY ssDNA-binding transcriptional regulator domain 82 252 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02583 Trre-Chr9 31352110 31355776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02583 13 259 Whirly Transcription Factor Family AT1G14410 53.968 2.16e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Trre9g02583 Whirly 1e-53 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02583 K26559 - pcin:129310571 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02583 9 31352110 31355776 Trre9g02583 9 31352110 31355776 ECH
Trre9g02583 9 31352110 31355776 Trre15g02240 15 18255085 18259320 PCT