Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02566 ATGGCGAAATTGTACTATCTCTACCATTTGACATGTTTGGTAGTAATCATACCTACATTAGTGCATGCTAATGTCAAAGAAGAAAAATCATACTGCGATAAGGTGTCTCCAACGCTAAAGGATCCATATTGGTCGGAAAAAGCAACAATTGCTGCAAAGAAGAATGACGAAGCTTATACTCCTGACCCATATGAAGTCTCCGAAAATCTGACTTCTAGCCTTGCAGATTGTGTGCAAGGTTTTGGAAGGAAGACAACTGGTGGAAAAGCTGGTCCCTTCTACGTGGTATCTGATCCTACAGATGCTGACATGTTGAATCCACGTCCAGGTACGCTTAGGCACGCAGTTACAAGAAATGGACCATTGTGGATCATCTTCGCTCGTAGCATGAACATTAGGCTCAGCCAAGAACTCATAATGACAAGTGACAAGACCATTGATGGACGAGGAACTGAAATTGTCATTGCTAATGGTGCTGGTATTACAATCCAGTATATTACGAATGTGATCATCCATGGGATCAAAAATTTTGACATTGTTGTTGGCAGTGGAGGAATGATCAGAGATGCTGAGAACCATTATGGTTTAAGGACTATGAGTGATGGTGATCGAATTTCAATTTTCGGCTCCAGTAATGTTTGGATTGATCATGTTTCCATGAGAAACTGCAGAGATGGACTCATTGATGCCATTATAGGATCAACTGGTATTACCATCTCCAATAGCCATTTCACATATCACAATGAGGTGATGTTGTTTGGTGCAAGTGATGGTTTCGATGGTGATCAGAAAATGCAAATCACAGTTGCATTCAACCACTTTGGTAAGAGATTAGTCCAAAGGATGCCAAGGTGCAGATATGGTTTTATCCATGTGCTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGAGGTAGCAAACACCCTACCATCATAAGCGAGGGTAACCGATTCATAGCCCCTGACAACGGCTTTGCTAAAGAGATAACAAAGAGGGAGTACACACCAGAGGCAGAGTGGAAATCCTGGACATGGAGATCAATCAATGACGTGTACATGAACGGAGCATTTTTCATACAAAGTGGATCTGAGCTGACTAACAGACCATTTTCAAGTAAGGAAATGATCACAGCTAAGCCTGGAACTTATGTGGGAAGGCTTACTCATTATTCTGGATGCCTTAGGTGCATAGTTGGGAAACCTTGTTAA 1215 0.4165 MAKLYYLYHLTCLVVIIPTLVHANVKEEKSYCDKVSPTLKDPYWSEKATIAAKKNDEAYTPDPYEVSENLTSSLADCVQGFGRKTTGGKAGPFYVVSDPTDADMLNPRPGTLRHAVTRNGPLWIIFARSMNIRLSQELIMTSDKTIDGRGTEIVIANGAGITIQYITNVIIHGIKNFDIVVGSGGMIRDAENHYGLRTMSDGDRISIFGSSNVWIDHVSMRNCRDGLIDAIIGSTGITISNSHFTYHNEVMLFGASDGFDGDQKMQITVAFNHFGKRLVQRMPRCRYGFIHVLNNDYTHWEMYAIGGSKHPTIISEGNRFIAPDNGFAKEITKREYTPEAEWKSWTWRSINDVYMNGAFFIQSGSELTNRPFSSKEMITAKPGTYVGRLTHYSGCLRCIVGKPC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02566 404 Pfam Pectate lyase 139 320 IPR002022 -
Trre9g02566 404 Gene3D - 63 397 IPR012334 -
Trre9g02566 404 SMART amb_all 129 326 IPR002022 -
Trre9g02566 404 SUPERFAMILY Pectin lyase-like 72 394 IPR011050 -
Trre9g02566 404 PANTHER PECTATE LYASE 18-RELATED 68 402 IPR045032 GO:0030570
Trre9g02566 404 Pfam Pectate lyase, N terminus 41 76 IPR007524 GO:0030570
Trre9g02566 404 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Trre9g02566 404 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Trre9g02566 404 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Trre9g02566 404 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Trre9g02566 404 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Trre9g02566 404 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Trre9g02566 404 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Trre9g02566 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02566 Trre-Chr9 31164274 31166223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02566 69 404 Polysaccharide Lyase AT1G14420 66.276 4.24e-164 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02566 K01728 - gmx:100796307 623.239