Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02565 ATGGCGAAATTGTACTATCTCTACCATTTGACATGTTTGGTAGTAATCATACCTACATTAGTGCATGCTAATGTCAAAGAAGAAAAATCATACTGCGATAAGGTGTCTCCAACGCTAAAGGATCCATATTGGTCGGAAAAAGCAACAATTGCTGCAAAGAAGAATGACGAAGCTTATACTCCTGACCCATATGAAGTCTCCGAAAATCTGACTTCTAGCGACAGGTGTTGGAGGTGTGATCCTAACTGGGAAAAAAATCGAAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGGAAGACAACTGGTGGAAAAGCTGGTCCCTTCTACGTGGTATCTGATCCTACAGATGCTGACATGTTGAATCCACGTCCAGGTACGCTTAGGCACGCAGTTACAAGAAATGGACCATTGTGGATCATCTTCGCTCGTAGCATGAACATTAGGCTCAGCCAAGAACTCATAATGACAAGTGACAAGACCATTGATGGACGAGGAACTGAAATTGTCATTGCTAATGGTGCTGGTATTACAATCCAGTATATTACGAATGTGATCATCCATGGGATCAAAAATTTTGACATTGTTGTTGGCAGTGGAGGAATGATCAGAGATGCTGAGAACCATTATGGTTTAAGGACTATGAGTGATGGTGATCGAATTTCAATTTTCGGCTCCAGTAATGTTTGGATTGATCATGTTTCCATGAGAAACTGCAGAGATGGACTCATTGATGCCATTATAGGATCAACTGGTATTACCATCTCCAATAGCCATTTCACATATCACAATGAGGTGATGTTGTTTGGTGCAAGTGATGGTTTCGATGGTGATCAGAAAATGCAAATCACAGTTGCATTCAACCACTTTGGTAAGAGATTAGTCCAAAGGATGCCAAGGTGCAGATATGGTTTTATCCATGTGCTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGAGGTAGCAAACACCCTACCATCATAAGCGAGGGTAACCGATTCATAGCCCCTGACAACGGCTTTGCTAAAGAGATAACAAAGAGGGAGTACACACCAGAGGCAGAGTGGAAATCCTGGACATGGAGATCAATCAATGACGTGTACATGAACGGAGCATTTTTCATACAAAGTGGATCTGAGCTGACTAACAGACCATTTTCAAGTAAGGAAATGATCACAGCTAAGCCTGGAACTTATGTGGGAAGGCTTACTCATTATTCTGGATGCCTTAGGTGCATAGTTGGGAAACCTTGTTAA 1263 0.4173 MAKLYYLYHLTCLVVIIPTLVHANVKEEKSYCDKVSPTLKDPYWSEKATIAAKKNDEAYTPDPYEVSENLTSSDRCWRCDPNWEKNRKKLADCVQGFGRKTTGGKAGPFYVVSDPTDADMLNPRPGTLRHAVTRNGPLWIIFARSMNIRLSQELIMTSDKTIDGRGTEIVIANGAGITIQYITNVIIHGIKNFDIVVGSGGMIRDAENHYGLRTMSDGDRISIFGSSNVWIDHVSMRNCRDGLIDAIIGSTGITISNSHFTYHNEVMLFGASDGFDGDQKMQITVAFNHFGKRLVQRMPRCRYGFIHVLNNDYTHWEMYAIGGSKHPTIISEGNRFIAPDNGFAKEITKREYTPEAEWKSWTWRSINDVYMNGAFFIQSGSELTNRPFSSKEMITAKPGTYVGRLTHYSGCLRCIVGKPC 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02565 420 Pfam Pectate lyase 155 336 IPR002022 -
Trre9g02565 420 SUPERFAMILY Pectin lyase-like 74 410 IPR011050 -
Trre9g02565 420 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Trre9g02565 420 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
Trre9g02565 420 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Trre9g02565 420 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Trre9g02565 420 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Trre9g02565 420 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Trre9g02565 420 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Trre9g02565 420 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Trre9g02565 420 SMART amb_all 145 342 IPR002022 -
Trre9g02565 420 Gene3D - 71 413 IPR012334 -
Trre9g02565 420 PANTHER PECTATE LYASE 18-RELATED 53 418 IPR045032 GO:0030570
Trre9g02565 420 Pfam Pectate lyase, N terminus 41 71 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02565 Trre-Chr9 31164274 31166223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02565 1 420 Polysaccharide Lyase AT2G02720 53.548 3.26e-175 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02565 K01728 - gmx:100796307 665.996