Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02559 ATGGGGCTGTTGGGTGCTGAGAATGGTAAAGTGGTGGAGTCTTGGGATGTGTGTAAATCTAAGGGGAGGAAGAAGAAAAAGAAGAGTGAAGAGAATGAGGGTGTTGTTGAAGACAAAAAAAATGGGTGTTGGGTTGGTTTGAGGTTATTTGGGAGCTGCATTTCTTCAAGATCCAAAGTTGATAGCTCAATCAGCGGCGCAAGTACTCATTATGCTGAAAGTAAATCGACTAATGATACGAGTAGAGGACAACCAACAGCTCCGGTAATATCTTCTACAACCACTAGTATTGCAGAAAGCAATTCCTCCACTTCTAAACTTGAAGATGAGATTAAAATTGCTTCTAGGCTGCGAAAGTTTACTTTCAATGAACTTAAGTTGGCAACAAGAAATTTCCGGCCCGAGAGTTTTCTTGGCGAAGGGGGATTTGGTTGTGTTTTCAAGGGGTGGATCGAAGAAAATGGAACTGCTGCAGTCAAACCAGGCACAGGGCTTACTGTCGCTGTAAAAACTCTTAACCATGATGGGCTTCAGGGTCATAAAGAATGGCTGGCTGAGGTAAACTTTCTTGGTGATCTTGTTCATCAAAACCTTGTTAAACTCGTAGGTTACTGCATTGAAGATGATCAAAGGCTGCTCGTGTATGAGTTTATGGCTCGGGGAAGCTTGGAGAATCACTTATTTCGGAGACCCTTGCCTCTTCCATGGTCCATTCGGATGAAAATTGCATTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCACGAAGAAGCTGAACGGCCAGTGATATATAGGGATTTTAAAACATCGAATATACTATTAGATGCAGACTACAATGCCAAGCTCTCGGATTTTGGTCTTGCCAAAGATGGTCCGGAAGGTGATAAAACCCACGTGTCGACTCGAGTGATGGGAACCTATGGTTACGCCGCACCTGAATATGTCATGACAGGTCATCTCACATCAAAAAGTGACGTGTACAGTTTCGGAGTCGTACTGCTTGAGATGTTGAGCGGCAGAAGATCTATGGACAAACATCGACCCAATGGCGAGCATAACCTTGTCGAATGGGCTCGACCACATCTAGGAGAACGAAGAAGGTTCTACCGGTTATTAGACCCTCGCCTTGAAGGTCACTTTTCCGTAAAAGGAGCTCAGAAAGCTGTTCAACTAGCCGCTCACTGCCTCAGTAGAGACCCGAAAGCCAGACCCTTAATGAGTGAAGTTGTCGAAGCTTTAAAGCCTCTTCCAAACCTTAAAGACATGGCAAGCTCTTCGTACTATTTCCAATCAATGCAAGCCGAGCGGTTCAGCGCGAGTCCAAACACTAGAAGTGCACATGCGCAAGGAGCATCACTCGCACGGAACGGACAACAGCGAAGGACCCTTTCAATACCGAACGGATCTCATGTATCTCCTTATCACCATAGGTATCCTCAACAATCACCTAAACCTAATGGTAAAGCATAG 1467 0.4499 MGLLGAENGKVVESWDVCKSKGRKKKKKSEENEGVVEDKKNGCWVGLRLFGSCISSRSKVDSSISGASTHYAESKSTNDTSRGQPTAPVISSTTTSIAESNSSTSKLEDEIKIASRLRKFTFNELKLATRNFRPESFLGEGGFGCVFKGWIEENGTAAVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHQNLVKLVGYCIEDDQRLLVYEFMARGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLSGRRSMDKHRPNGEHNLVEWARPHLGERRRFYRLLDPRLEGHFSVKGAQKAVQLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQSMQAERFSASPNTRSAHAQGASLARNGQQRRTLSIPNGSHVSPYHHRYPQQSPKPNGKA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02559 488 Gene3D Phosphorylase Kinase; domain 1 106 217 - -
Trre9g02559 488 Pfam Protein tyrosine and serine/threonine kinase 137 412 IPR001245 GO:0004672|GO:0006468
Trre9g02559 488 FunFam Serine/threonine-protein kinase BIK1 99 217 - -
Trre9g02559 488 MobiDBLite consensus disorder prediction 71 101 - -
Trre9g02559 488 CDD STKc_IRAK 138 415 - -
Trre9g02559 488 ProSitePatterns Protein kinases ATP-binding region signature. 138 170 IPR017441 GO:0005524
Trre9g02559 488 ProSiteProfiles Protein kinase domain profile. 132 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02559 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Trre9g02559 488 FunFam Probable serine/threonine-protein kinase PBL8 218 433 - -
Trre9g02559 488 SUPERFAMILY Protein kinase-like (PK-like) 110 412 IPR011009 -
Trre9g02559 488 MobiDBLite consensus disorder prediction 438 488 - -
Trre9g02559 488 MobiDBLite consensus disorder prediction 438 468 - -
Trre9g02559 488 PANTHER OS01G0588500 PROTEIN-RELATED 88 415 - -
Trre9g02559 488 Gene3D Transferase(Phosphotransferase) domain 1 218 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02559 Trre-Chr9 31019089 31022601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02559 79 412 Glycoside Hydrolase AT3G07070 53.412 7.52e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre9g02559 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02559 - - gmx:100787151 849.351