Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre9g02552 | ATGGAATCAAACTCAATTTCAATAAAACAATCCTTCGAAAAATTTTACTCACACCACGCGCGCGAATCGCTCGACGAATTGTCTGAAAATTTTACAATAACCGACCCTTCAATTTCAGGCCATCCTATTATCTTCGCAAGTCACGCGTTTCTTAAGATGACTGGTTTCACGCGCGATGAAGTTGTTGGACGAAGTGGTTCCATTTTTCAAGGTCCTGCTACTTGTCGTAGGTCGGTGTTAGAAATTCGTGAAGCTGTTAGGGAAGAAAGAGAGACTAATGTTGTTTTGGTTAATTATCGTAAAAATCGAACACCCTTTTGGATTTTGTTGAATGTTTCACCTGTTTTTTGTAAGCTACGTGGTTCTGTTGTTCATTTTGTTGCTGTTCAGGTTCCTTTAGATACAACAAGATCGAGGGTTTTTAGTAGTAGTAGTAGTAGTAGTTCTGTTCAGGTTCATGATTTTGTTTTTCGTTGTTGTCGGAAAGAAGTTTGTTCTGATTCTTTGGCTGAACAACTTGGTCGTGTTTCTTCTGGGAATCATCAAGTGTTGGAACATGATGTCACCGAATTAGAGAGTGAAGAGCCACGTGAGGCAAGTGACGATGAGAGGAGAAGTGCGGTGACTGCCATGGACAACATCTTTTCTGTGCTAACCCACTATAGCGAGTTGACGGGGAGATTGGTGTGTAGAAAGAGATGCAGCATTCCTGACGTGGGTCTTCTTTGCTCTTCCTTGATTATTTCTCTTGGTAGAATCAAGCAAAGCTTTGTATTAACTAATCCACATTTGCCAGACATGCCTATTGTTTATGCCAGTGACGCCTTCATGAAATTGACAGGTTATGCGAGAGACGAGGTATTGGGCCGCAACTGTAGATTTTTAGGTGGAAGAAATACCGATGACTCAGCTCTACATCTGATAACAGAAAGCATAAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAAGATAAAAGCTCATTTTGGAATCTTCTTCACATCTCACCTGTTCGGGATGCTTCTGGAAAGGTAGCATACTTTGTGGGAGTTCAAATAGAAGACGACTATAAAAACGAGGACTATAGACAGTGTTGGAGACCTGACATGAAACAGCTTAGTGTGGTTGGTGTAGTCAAAGTTGCAGTGAGGAGTTTATCCATGTCTGCTGGATCGTCTAAGAGATAG | 1197 | 0.411 | MESNSISIKQSFEKFYSHHARESLDELSENFTITDPSISGHPIIFASHAFLKMTGFTRDEVVGRSGSIFQGPATCRRSVLEIREAVREERETNVVLVNYRKNRTPFWILLNVSPVFCKLRGSVVHFVAVQVPLDTTRSRVFSSSSSSSSVQVHDFVFRCCRKEVCSDSLAEQLGRVSSGNHQVLEHDVTELESEEPREASDDERRSAVTAMDNIFSVLTHYSELTGRLVCRKRCSIPDVGLLCSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFMKLTGYARDEVLGRNCRFLGGRNTDDSALHLITESIKTEQPCTVRILNYRKDKSSFWNLLHISPVRDASGKVAYFVGVQIEDDYKNEDYRQCWRPDMKQLSVVGVVKVAVRSLSMSAGSSKR | 398 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre9g02552 | 398 | NCBIfam | PAS domain S-box protein | 43 | 117 | IPR000014 | - | |
| Trre9g02552 | 398 | NCBIfam | PAS domain S-box protein | 269 | 354 | IPR000014 | - | |
| Trre9g02552 | 398 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 259 | 355 | IPR035965 | - | |
| Trre9g02552 | 398 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 32 | 130 | IPR035965 | - | |
| Trre9g02552 | 398 | SMART | pac_2 | 319 | 361 | IPR001610 | - | |
| Trre9g02552 | 398 | SMART | pac_2 | 93 | 136 | IPR001610 | - | |
| Trre9g02552 | 398 | CDD | PAS | 43 | 116 | IPR000014 | - | |
| Trre9g02552 | 398 | ProSiteProfiles | PAS repeat profile. | 16 | 65 | IPR000014 | - | |
| Trre9g02552 | 398 | ProSiteProfiles | PAS repeat profile. | 269 | 291 | IPR000014 | - | |
| Trre9g02552 | 398 | CDD | PAS | 265 | 354 | IPR000014 | - | |
| Trre9g02552 | 398 | SMART | pas_2 | 244 | 317 | IPR000014 | - | |
| Trre9g02552 | 398 | SMART | pas_2 | 18 | 91 | IPR000014 | - | |
| Trre9g02552 | 398 | FunFam | protein TWIN LOV 1 | 256 | 393 | - | - | |
| Trre9g02552 | 398 | PANTHER | PROTEIN TWIN LOV 1 | 6 | 388 | - | - | |
| Trre9g02552 | 398 | Gene3D | PAS domain | 30 | 228 | - | - | |
| Trre9g02552 | 398 | Gene3D | PAS domain | 256 | 388 | - | - | |
| Trre9g02552 | 398 | FunFam | Protein TWIN LOV 1 isoform D | 30 | 220 | - | - | |
| Trre9g02552 | 398 | Pfam | PAS domain | 41 | 130 | IPR000014 | - | |
| Trre9g02552 | 398 | Pfam | PAS domain | 256 | 355 | IPR000014 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre9g02552 | Trre-Chr9 | 30875388 | 30879738 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre9g02552 | 246 | 357 | AGC Kinase Gene Family | AT5G58140 | 47.321 | 3.34e-34 | 133 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre9g02552 | - | - | gmx:100785562 | 534.643 |