Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02546 ATGGCTAGGAATTTTGAGTTCATCAAGGACATCAATGACCGTAAAGACCTATGGAAAATCGCTGTTAAGGTTAGGGACAAATGGACTTCACAGAAAGAGGGAAAAAAGTATTTGGAATTGGTTGTTGTTGACTCAAAGGGAGATGACATTTTTGTCATTGTTCCAAATGAGTTGAAAACCAAATACGAAAAGGAGATTCCTATTGTTGAGAAGAACACTTACACTATGCAAAACTTTCAAGTCACCAAAAATCAGGAAAAGTTCAAATCATCCCATCATGAATTCATGCTAAAGTTCAATGGTGGAACCAAGGTTTCTGATTGCAATAAACATGACATTACTGACACCCTGCACTTTAAAGATTTCACTGAAATCCTTTGTAACAAATTTCGTGAAGATTTCTTATACGATATCATAGCAGCTGTGGATGAGATTGGTTATACCCAGCCTCATGCAGGAAGTAAAAAAATACAAGTTAACTTAAAGCTTAAGGATGTTAGTGGTGTTACCTTGCATTGCACCCTATGGGAAGATTATGCAACAAAGTTTATCAATTTTTTGAATGGTAACAATGATGGTGGTCCAACCATTCTTTGTATGAAATATGCCAAAATCAAGAAAGAAGGAAAATATCCACTCACTATATCCAACACATGGAGTACAACTAAACTTTGGATCAATGATGGACTACCTGAGATTCTTGAATTCAAGCAAAGATTTGTTGCTGCAATTGATAAAGGAACAATTTCTGCTGTGTCTGATTCTCAGTCACAAAGGATGAGTCAATCATATGGAGGATCACAGTACACAAATGGCTCACAATTTACTCCTGAACAGAAGTTTTATCACAATGCAGAAGTCATGCCTTTGAACAGAATTGTGGAACTCACTCAAGAGACAAAGTGTGTTACTGTTGTCAATTGTGTTAAGTGTAGTGATGATCACTCCACCGAAACTGAAATACTAAGGTATAAGTTGGATATTGAAGTTGAAAATTGCAATGTTAGAGCTTCTTTTGTTTTTTGGGATCGCGAATGTGCACAGTTATTGAACCAATCTGCAGAACAGCTCCGTGCTAAAATGATTAAGGATGGAATAACTGATCCTTTAGACTATCCACAAGCCATGGATGATATTGGTGGGAGAACTTTAGCAGTGAAAGTTAAGTGGCAACCAAACTGGAAATCTGGATCAGTTATGGCTATAATGCTTGATGATGAAGCTATCGACAAAGTCCAATCTCAATTCCTCCCTCATGAGGTGCCAAAGACACAAAATGATAACCTGCAGAACAAGAAACCTGAACTTGAGGAAATTGAGTCGCAAGACATGGCTCCGGTTGAATCAACAGCATCTGTTGATGAGAATGTTATCCCAATGCTTGACCTATCCGCAACGGATGAAATTGGGACTGAGAATTTGGAATTCAAGACACCACAAAAGCGTGCGGGAAAGGAACTAAGGTCCACAACCAGGAAATTAAATGCAAAAGAAGTTGATGCTGATGATATCATTGGTTCCAAGCTTTCTTCAACCAAACTCATGAAAATCCCCAAAAAGGAGTAA 1566 0.3787 MARNFEFIKDINDRKDLWKIAVKVRDKWTSQKEGKKYLELVVVDSKGDDIFVIVPNELKTKYEKEIPIVEKNTYTMQNFQVTKNQEKFKSSHHEFMLKFNGGTKVSDCNKHDITDTLHFKDFTEILCNKFREDFLYDIIAAVDEIGYTQPHAGSKKIQVNLKLKDVSGVTLHCTLWEDYATKFINFLNGNNDGGPTILCMKYAKIKKEGKYPLTISNTWSTTKLWINDGLPEILEFKQRFVAAIDKGTISAVSDSQSQRMSQSYGGSQYTNGSQFTPEQKFYHNAEVMPLNRIVELTQETKCVTVVNCVKCSDDHSTETEILRYKLDIEVENCNVRASFVFWDRECAQLLNQSAEQLRAKMIKDGITDPLDYPQAMDDIGGRTLAVKVKWQPNWKSGSVMAIMLDDEAIDKVQSQFLPHEVPKTQNDNLQNKKPELEEIESQDMAPVESTASVDENVIPMLDLSATDEIGTENLEFKTPQKRAGKELRSTTRKLNAKEVDADDIIGSKLSSTKLMKIPKKE 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02546 521 CDD RPA1_DBD_B_like 137 240 - -
Trre9g02546 521 Gene3D - 114 248 IPR012340 -
Trre9g02546 521 SUPERFAMILY Nucleic acid-binding proteins 119 240 IPR012340 -
Trre9g02546 521 Gene3D - 288 410 IPR012340 -
Trre9g02546 521 SUPERFAMILY Nucleic acid-binding proteins 4 108 IPR012340 -
Trre9g02546 521 CDD RPA1_DBD_A_like 19 105 - -
Trre9g02546 521 Gene3D - 3 108 IPR012340 -
Trre9g02546 521 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02546 Trre-Chr9 30815646 30818514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02546 18 240 Core DNA Replication Machinery Family AT4G19130 22.034 2.64e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02546 - - tpra:123887332 549.28