Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02545 ATGGTTGTGAATTTGACGCAAGGAGCGATAGCGAGAATTTTCAGCGACGATTCCGTCTACTGTAGTGATGTAGAGATTAATCCAGTACTGCAAATAATTGAGGTGGAAAACCGATGTGTTTGGCTATCTGATGGTACAAATTCTGATGATGGATTGCTCGCCGGTAATCTGTTTAATTTGTTCTTTTTAGAAAAATTGCAGAAAGGTTCTGTTGTTAGACTCACTATTTACACCAGGACCAAATCTTCAAACAGGTGA 258 0.3915 MVVNLTQGAIARIFSDDSVYCSDVEINPVLQIIEVENRCVWLSDGTNSDDGLLAGNLFNLFFLEKLQKGSVVRLTIYTRTKSSNR 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02545 85 Gene3D - 3 85 IPR012340 -
Trre9g02545 85 Pfam Replication factor-A protein 1, N-terminal domain 5 79 IPR007199 GO:0003677|GO:0005634|GO:0006260
Trre9g02545 85 SUPERFAMILY Nucleic acid-binding proteins 1 80 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02545 Trre-Chr9 30781519 30781776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02545 1 75 Core DNA Replication Machinery Family AT4G19130 36.782 1.11e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02545 K07466 - gmx:100812465 47.7506