Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02535 ATGGCTGGTGGCAAGCTTTTTGGTGGTTCTAATATGTCTCTTTTGCTTCAAAATGAAAGACTACCTTGTTCCTCTGAAGTCCTTGAATCTCTTTGGGGTCACACCCCTGCTTCTTTTCATGGTTCAAATTCAGTGGTTGATTTTGAGAATGGTGGTGGTGGAAACAGAGTGGTAACAGATAGATCCTTCTTTCAACAACTTGAGAAAGAAGAGAATTGTGGTGATGATGATTATGAAGCATGTTTCCATCAACAAGGTAAAAAAAGGAGGCTTTCAAGTGAACAAGTTCAGTTCCTTGAAAAGAGCTTTGAGGTAGAAAACAAACTTGAACCTGAAAGGAAAGTTCAACTTGCAAAAGATCTTGGTTTACAACCAAGACAAGTTGCTATATGGTTCCAAAATAGAAGGGCAAGGTTCAAAACAAAGCAGCTTGAAAAAGATTATGGCACATTGAAAGCTAGTTTTGATTGTCTCAAAGATGATTATGATAATCTACTTCAAGAGAATGACAAGTTAAAAGAAGAGGTGAATTCTCTCAAGAACAAATTGAATCCAAGAGACAAAGAGAAAGAGAAATCAGATGAAAAAGAAGCTATCAATTCACCTCAAAACAACAAAGATTCTATGGATTTAATCTCAATAGCAAATTGTTCAAAAGGGTCCAAAGTGTCACTCCCTAATATGGTACTAAAATGTAAACAAGAAGATGCTAATTCAGCTAAAAGTGATGTGCTTGATTCTGATAGCCCACATTGCAATGATGTGAACAATCTTTCTTCATTCATTGAGCCTACAGATTCTTCACATGTTTTTGAACCTGATCACTCAGATTTCTCACAAGATGAAGAAGATAATGATAACTTGAGTGATAATCTTTTGACCCTTCCAAAGATTGAAGATGTTTGTTATGATGACCCACATGAAAATTCTTGTAATTTTGGGTTCCCTGTTGAAGATCAAACTTTTTGTTTCTGGCCTTATTGA 984 0.3577 MAGGKLFGGSNMSLLLQNERLPCSSEVLESLWGHTPASFHGSNSVVDFENGGGGNRVVTDRSFFQQLEKEENCGDDDYEACFHQQGKKRRLSSEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDCLKDDYDNLLQENDKLKEEVNSLKNKLNPRDKEKEKSDEKEAINSPQNNKDSMDLISIANCSKGSKVSLPNMVLKCKQEDANSAKSDVLDSDSPHCNDVNNLSSFIEPTDSSHVFEPDHSDFSQDEEDNDNLSDNLLTLPKIEDVCYDDPHENSCNFGFPVEDQTFCFWPY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02535 327 MobiDBLite consensus disorder prediction 176 201 - -
Trre9g02535 327 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Trre9g02535 327 CDD homeodomain 87 143 IPR001356 GO:0003677
Trre9g02535 327 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Trre9g02535 327 SMART HOX_1 85 146 IPR001356 GO:0003677
Trre9g02535 327 Coils Coil 155 182 - -
Trre9g02535 327 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Trre9g02535 327 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Trre9g02535 327 Gene3D - 81 148 - -
Trre9g02535 327 FunFam homeobox-leucine zipper protein ATHB-6-like 90 136 - -
Trre9g02535 327 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
Trre9g02535 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 61 228 IPR045224 GO:0003700
Trre9g02535 327 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Trre9g02535 327 MobiDBLite consensus disorder prediction 176 210 - -
Trre9g02535 327 SUPERFAMILY Homeodomain-like 76 144 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02535 Trre-Chr9 30561712 30563646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02535 87 254 Homeobox Transcription Factor Family AT3G01470 48.810 7.83e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre9g02535 Homeodomain 5.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02535 - K09338 zju:107428804 380.948