Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02527 ATGAGTCGTAAGAGAGACAACTCCCACTTTTCCCGCCACGACTTCAAGCGCCGTCGACCACTACCGGAGCCAGCGGAGGAAGAAAAACCCACCACAAGGCCAACGCCACCATCTGCAGTAGTCGTCATGGGTCTTCCTCTTGACTGTTCCGTCCTCGATCTCAAGTCTCGTTTCGAGATCTACGGCTCCATCTCCCGCATCCGTATCGACCGTGACGCCGTCGGATACATCACCTACCGGACTAAAGACTCCGCCGACGCCGCCATTGCTGCTGGCCTTGATCCTTCGTTTGGAGTCACCGTTAATTCCAAAAAGGTTCAGGTGTTGTGGGCAACGGATCCTCTAGCAATGTGGAGGGAAGGAGTTGGTAAGAACAAGGATAGTGTGTCTATGTCAAAACTTGTGCGAGCCGAGGTTCCTTTGAGGAGGCATGGAAGAGGTAATAAACTTTCTTCTGCTATTGGGAATACCAAAAGTAGTGAGGATGGTTCTGGTAGCTCAGTTCTTGAAGTTCCTTTTAAGGGAAGAGAAATTGTTGCTTATGATGATATCTTGTAA 558 0.5 MSRKRDNSHFSRHDFKRRRPLPEPAEEEKPTTRPTPPSAVVVMGLPLDCSVLDLKSRFEIYGSISRIRIDRDAVGYITYRTKDSADAAIAAGLDPSFGVTVNSKKVQVLWATDPLAMWREGVGKNKDSVSMSKLVRAEVPLRRHGRGNKLSSAIGNTKSSEDGSGSSVLEVPFKGREIVAYDDIL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02527 185 Gene3D - 1 115 IPR012677 -
Trre9g02527 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Trre9g02527 185 PANTHER GEO13361P1-RELATED 29 140 - -
Trre9g02527 185 MobiDBLite consensus disorder prediction 1 38 - -
Trre9g02527 185 MobiDBLite consensus disorder prediction 150 166 - -
Trre9g02527 185 CDD RRM_SF 40 108 - -
Trre9g02527 185 MobiDBLite consensus disorder prediction 146 167 - -
Trre9g02527 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 90 IPR000504 GO:0003723
Trre9g02527 185 SUPERFAMILY RNA-binding domain, RBD 26 119 IPR035979 GO:0003676
Trre9g02527 185 SMART rrm1_1 39 109 IPR000504 GO:0003723
Trre9g02527 185 MobiDBLite consensus disorder prediction 16 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02527 Trre-Chr9 30449521 30450850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02527 1 185 Homeobox Transcription Factor Family AT1G27050 52.683 4.20e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02527 - - ccaj:109806897 291.967