Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02485 ATGGCGGTGCTTGGCGACAACGAAAGCATTCCGATGATTCAGTCCCTCAAGAAGGAGAACATCTCTTTGTTGTCTGAATCTCATTATGACATTGATAATTCTCGGAAATATGTGAGGTACTCTGCTGAACAGATTGAAGCTTTGGAAAAGGTTTACGTGGAATGCCCCAAGCCAAGTTCCATGAGTAGGCAACAGCTGATTCAGGAGAATCTGGTTTTGTCCAACATTGAACCTGAGCAAATTAAGGTGAAAAATGGAATCTAA 264 0.4205 MAVLGDNESIPMIQSLKKENISLLSESHYDIDNSRKYVRYSAEQIEALEKVYVECPKPSSMSRQQLIQENLVLSNIEPEQIKVKNGI 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02485 87 CDD homeodomain 35 83 IPR001356 GO:0003677
Trre9g02485 87 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 33 83 IPR044830 GO:0003700
Trre9g02485 87 SUPERFAMILY Homeodomain-like 29 71 IPR009057 -
Trre9g02485 87 Pfam Homeodomain 35 83 IPR001356 GO:0003677
Trre9g02485 87 Gene3D - 27 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02485 Trre-Chr9 29633164 29635158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02485 31 83 Homeobox Transcription Factor Family AT5G60690 71.698 1.82e-21 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre9g02485 Homeodomain 9.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02485 K09338 - aof:109836305 85.1149