Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02455 ATGGATCCAGCGCCAGTAATCAACGCTGCTCCCAACTCCCCGTCGTATCACCTTCCGGAGATCTGGAACTTCCCGCCGTCCAAAACACCGCATTTCACCAACGACTTCGGAGATTTTCTGGTGGAAGATCCTCCTAGAGAGCAGAAACCGTTCAACCATGGCCGGAAAAGGCGCGACACCGCGGAGGATTCTGTTAAAGGCCTTTCCACCAGCAATGGCGGTGGCAATAGCAACGCCGTGAATGATGGTGGTGGTGATGGAAAAAGGAGTAAGACAAGGAATGAGAGCAATAAAGGTGAAGGAGAAGAAAACAGTTCAGGAAAGCATGCGGAAGAAACTAGTGATCAGCCAAATCCTAAGCAAGACTACATCCATGTCCGAGCTAGAAGAGGTCAAGCTACTGATAGCCACAGTCTTGCTGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAACTCTTCAGGATTTAGTCCCTGGTTGCAACAAGGTTATTGGTAAAGCATTGGTCCTTGATGAGATAATCAATTATATCCAATCACTTCATCACCAAGTAGAGTTTTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGATTGACACCTGGTATTGAAGTGTATCCTCCTAAAGATTTTGATCAGCAAAGATACGATACAACCGCCATACCATTTGCTTCACAAACTACAAGAGAGTACAACCGGGTTTCATCACCAGAGTGGTTACATATGCAGTTGGGAGGTGGTTTTGAAAGAGCAACGTAG 762 0.4541 MDPAPVINAAPNSPSYHLPEIWNFPPSKTPHFTNDFGDFLVEDPPREQKPFNHGRKRRDTAEDSVKGLSTSNGGGNSNAVNDGGGDGKRSKTRNESNKGEGEENSSGKHAEETSDQPNPKQDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLHHQVEFLSMKLEAVNSRLTPGIEVYPPKDFDQQRYDTTAIPFASQTTREYNRVSSPEWLHMQLGGGFERAT 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02455 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 200 IPR036638 GO:0046983
Trre9g02455 253 MobiDBLite consensus disorder prediction 40 64 - -
Trre9g02455 253 MobiDBLite consensus disorder prediction 86 120 - -
Trre9g02455 253 MobiDBLite consensus disorder prediction 65 79 - -
Trre9g02455 253 FunFam Basic helix-loop-helix transcription factor 129 201 - -
Trre9g02455 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 182 IPR011598 GO:0046983
Trre9g02455 253 Gene3D - 129 203 IPR036638 GO:0046983
Trre9g02455 253 Pfam Helix-loop-helix DNA-binding domain 136 182 IPR011598 GO:0046983
Trre9g02455 253 SMART finulus 138 188 IPR011598 GO:0046983
Trre9g02455 253 CDD bHLH_AtBPE_like 122 205 - -
Trre9g02455 253 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 62 223 IPR024097 GO:0006355
Trre9g02455 253 MobiDBLite consensus disorder prediction 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02455 Trre-Chr9 29126531 29129294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02455 1 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 51.915 6.66e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g02455 HLH 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02455 - - psat:127119455 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02455 9 29126531 29129294 Trre9g02455 9 29126531 29129294 ECH
Trre9g02455 9 29126531 29129294 Trre9g02455 9 29126531 29129294 PCT