Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02451 ATGGCAAGAAAAACACTCAAATTAGAATATATAACCAATCAATCGAAGAGGAATGCAACCTACAAAAGAAGGAAATCTGGTTTACTAAAGAAGATTTATGAACTCATCACCCTTTGTGGGATAGAAGCTTGTCTATTAATATATGGCGAAAATAATGTTCAACCTGAAGTTTTCCCACCCGCTCCGATAGCAAGAAATGTGTTAGGAAAGTTCCTGAGTTTGCCTGAAATTGAACGAAACAAAAAGATGATGGATTTGGAGGGCTTCTTGAAGACCAAGATATCGAAAACCCAAAAGTTGCTGATGAAACAAATTGACGAAAACCAAAAAAAGTTTAGAATTTTAATTACTAATTTCTCGAAGAATTTAGACTGTAATATGACGGGGGTTATCGAGAAGAAATTATATGATGTTGAACGAAAATTGCGTTCAATGAAAATTCAAGCCCAAGAGGAGACTGAGAATGGAACTGAAGCTGTCAATGAAACAACCAATGCGGGTCATGTTGTTGATACATGA 519 0.3565 MARKTLKLEYITNQSKRNATYKRRKSGLLKKIYELITLCGIEACLLIYGENNVQPEVFPPAPIARNVLGKFLSLPEIERNKKMMDLEGFLKTKISKTQKLLMKQIDENQKKFRILITNFSKNLDCNMTGVIEKKLYDVERKLRSMKIQAQEETENGTEAVNETTNAGHVVDT 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02451 172 PANTHER MADS BOX PROTEIN 7 126 - -
Trre9g02451 172 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre9g02451 172 Coils Coil 135 155 - -
Trre9g02451 172 MobiDBLite consensus disorder prediction 149 172 - -
Trre9g02451 172 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Trre9g02451 172 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre9g02451 172 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Trre9g02451 172 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre9g02451 172 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre9g02451 172 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre9g02451 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Trre9g02451 172 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02451 Trre-Chr9 29109806 29110907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02451 1 160 Type I MADS-box Gene Family AT5G48670 41.520 7.34e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre9g02451 SRF-TF 1.9e-15 No_clan