Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02449 ATGAACCAACACGTTCCTTCATCTCGAAATTTTCGACTCGGCCGAGTCAAGCCACAAGCTCCCGGTAACCGCACAATCTTCTGTAACGATCGTCAAGCAAATCACCTCGCTCGATTCAAGGGGAATTCAATATCCACTACAAAGTACAACTTTTTCACTTTTTTGCCAAAAGGATTGTTTGAACAGTTCAGGCGGGTTGCTAATCTCTATTTTCTTACAATCTCAATTTTGTCTACCACACCAATCAGCCCTGTGTCTCCGATCACTAATGTGCTTCCTCTATCTATGGTGCTTCTCCTATCTCTTATTAAGGAGGCTTTTGAGGATTGGAAACGGTTTCAAAATGACATGGCCATAAACAATAACAGGATACATGTTTTGCAAGATAAAGAGTGGGTGTCTATACCATGGAAAAAACTGCAAGTTGGCGACATTGTTAAGGTTAAGCAAGATGGATTCATTCCTGCTGATTTGCTTTTCCTAGCTAGTACAAATGTAGATGGTGTCTGCTATATTGAGACTGCTAATTTGGATGGAGAAACCAATTTGAAGATCAGAAAAGCATTGGAAAAGACTTGGGATTATGTGACTCCAGAGAAGGCCTCTGAATTTAAAGGTGAAATTCAATGTGAACAACCAAACAATTCATTGTATACCTTCACTGGAAATCTTATAATTCAAGACCAAACACTTCCTCTCAGTCCAAATCAACTTTTGTTGCGAGGATGCAGCCTCAGGAATACAGGACATATTGTCGGGGTTGTTATTTTCACAGGACATGAAACAAAGGTGATGATGAATGCTATGAATGTTCCTTCCAAAAGAAGTACACTGGAGAGGAAACTTGACAAGCTCATACTCACTCTATTTGCAACTCTCTTTATGATGTGTTTTATAGGAGCTGTAGGCAGTTCTATCTTTGTAAGCACGAAGTATTTCTATTTACATCTTGAATCACCAGAAGAGGAAGGCTTAGCACAGTTCAATCCAAGAAATAGATTAGGGGTTTTTCTTCTGACTATGTTTACCCTCATCACTTTATACTCAACAATCATCCCTATTTCACTTTATGTATCCATAGAGATGATCAAATTTATCCAGTCCACTAAATTTATCAACAACGACTTGCACATGTACCATCATGAAACCAATACCCCAGCATTGGCCAGAACTTCAAATCTAAATGAAGAACTTGGACAGGTTGAATACATCTTCTCAGACAAAACTGGGACTCTTACAAGAAACTTAATGGAGTTCTTCAAGTGCTCAATTAGAGGAGAGGTGTATGGAAATGGTGTGACCGAAATTGAGAAAGGAATAGCAGAGCGCAGGGGCATAAAACTAGAGGAAAATATCTCACCCTATGCAGTGCGAGAGAGGGGTTTCAATTTTGATGATGCTAGGCTCATGGGAGGAGCTTGGAGGAATGAGCCAAATCCCGATAGCTGCAAGGAATTCTTCAGATGCCTTGCTATTTGCCATACTGTGCTTCCCGAGGGAGACGAGTTCCCTGAAAAGATCAGATACCAGGCGGCATCACCTGATGAGGCTGCTTTGGTTATTGCTGCAAAGAACTTCGGTTTTTTCTTTTACAGACGTACACCTACAATGATATATGTTCGTGAATCTCATGCTGAAAAGATGGACATAGTTCAAGATGTTTCCTATGAGATTTTGAATGTGCTTGAGTTTAACAGTACAAGGAAGCGTCAATCTGTTGTTTGTCGTTATCCAGATGGGAGGCTTGTATTGTACTGTAAGGGTGCTGATAATGTAATCTTTGAGAGACTAGTTGACGGTTCTAATGATATTAAAACAGTTACTAGGGAGCATTTGGAACAGTTTGGATCTGCTGGACTACGCACATTGTGCCTGGCATACAAAGAATTACATCCTGGTGTTTATGAAAACTGGAACAAGAAGTTCCTTCAGGCGAAATCCTCACTAAGTGATCGGGAAAAGAAGTTAGATGAGGTGGCAGAACTTATAGAAAATGATCTCATTTTGATTGGTAGCACTGCCATAGAAGACAAGCTTCAAGATGGAGTACCTGCCTGCATAGATACTCTTCAAAGAGCTGGCATAAAAATTTGGGTGCTTACAGGGGACAAGATTGAAACAGCAATCAATATTGCCTATGCTTGCAATTTAATAAACAATGAAATGAAGCAATTCATTATCAGTTCAGAAACCGATGCAATTAGAGAAGTTGAAGAAAGGGGGGACCAAGTAGAAATTGCGCGATTTATTAGAGAAGAAGTTAAGCAAGAGCTGAAGAAGTGCCTTGAGGAAGTACAAAGCTATTTTAATTCTCCACCTGCACCAAATTTAGCACTTGTAATTGATGGAAAATGTCTAATGTATGCACTGGATCCAAGTTTGAGAGTCATGCTACTGAATTTGAGTTTGAATTGCCATTCTGTTGTTTGCTGCCGAGTTTCTCCTTTACAGAAAGCACAGGTCACAACTTTGGTCAAGAATGGTGCACGGAAAATAACACTTGGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGAATAAGTGGGATGGAGGGGATGCAAGCCGTAATGGCTAGTGATTTTGCAATTGCACAGTTTCGTTACCTTGTAGATTTACTTCTTGTTCATGGTCGGTGGTCATATCTTCGAATATGCCAGGTGGTAACATACTTCTTTTACAAGAATCTCACTTTCACTCTTACTCAGTTTTGGTTTAACTTCCAAACTGGGTTTTCTGGCCAGAGATTCTATGATGATTGGTTTCAGTCATTGTATAATGTTATATTCACTGCGCTTCCTGTGATCATGGTTGGCCTATATGACAAGGATGTTAGTGCATCTCTATCCATGAAGTATCCTGCACTATACATGGAGGGAATAAGAAATGCCTTTTTCAAATGGAGAGTTGTAGCTATAAGGGCCTTTCTTTCTGTTTACCAGTCTCTAATATTCTTTTATTTTGTGAGTTCTTCAAATTTAAGTGCTAAAAATTCAGAAGGCAAGATATTTGGACTCTGGGATGTTAGTACTATGGCCTTCACATGTGTTGTAATAACTGTTAACTTCCGACTTCTGATGAATTGTAATTCAATCACAAGGTGGCACTATATTAGTGTTGGTGGAAGTATATTAGGATGGTTTGTGTTTGTTTTCATATATTCATGGATCAGAACTCGCTATGATCGACAGGAGAATGTGTATTTTGTCATTTATGTCTTGATGAGTACACCGTATTTCTACATTATGCTACTTCTTGTCCCTGTTGCGGCACTTTTTTGTGACTTTCTTTACCTAGGGGCTCAGAGATGGTTCTTTCCATATGATTATCAAATTATTCAAGAACTGCATAGACATGAGAATGATGATTCCGGCAGGGCCCAACGGCTAGAGATATGGAACCAGTCTCCACCTGAGGAAACAGCCCTTGAAATAACTGAACTCCCACGTGCGATATCAAAGAACACCGGGTTTGCTTTTGATTCACCTGGTTATGAGTCATTTTTTGCTACACAGCTTGGTGTACATACGTCTCAAAACGCCTGGGATGTCGCAAAACGTGCTAGCGTGAGATCGAAGGAGGATATTGAATAA 3615 0.3989 MNQHVPSSRNFRLGRVKPQAPGNRTIFCNDRQANHLARFKGNSISTTKYNFFTFLPKGLFEQFRRVANLYFLTISILSTTPISPVSPITNVLPLSMVLLLSLIKEAFEDWKRFQNDMAINNNRIHVLQDKEWVSIPWKKLQVGDIVKVKQDGFIPADLLFLASTNVDGVCYIETANLDGETNLKIRKALEKTWDYVTPEKASEFKGEIQCEQPNNSLYTFTGNLIIQDQTLPLSPNQLLLRGCSLRNTGHIVGVVIFTGHETKVMMNAMNVPSKRSTLERKLDKLILTLFATLFMMCFIGAVGSSIFVSTKYFYLHLESPEEEGLAQFNPRNRLGVFLLTMFTLITLYSTIIPISLYVSIEMIKFIQSTKFINNDLHMYHHETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIRGEVYGNGVTEIEKGIAERRGIKLEENISPYAVRERGFNFDDARLMGGAWRNEPNPDSCKEFFRCLAICHTVLPEGDEFPEKIRYQAASPDEAALVIAAKNFGFFFYRRTPTMIYVRESHAEKMDIVQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADNVIFERLVDGSNDIKTVTREHLEQFGSAGLRTLCLAYKELHPGVYENWNKKFLQAKSSLSDREKKLDEVAELIENDLILIGSTAIEDKLQDGVPACIDTLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFIISSETDAIREVEERGDQVEIARFIREEVKQELKKCLEEVQSYFNSPPAPNLALVIDGKCLMYALDPSLRVMLLNLSLNCHSVVCCRVSPLQKAQVTTLVKNGARKITLGIGDGANDVSMIQAAHVGVGISGMEGMQAVMASDFAIAQFRYLVDLLLVHGRWSYLRICQVVTYFFYKNLTFTLTQFWFNFQTGFSGQRFYDDWFQSLYNVIFTALPVIMVGLYDKDVSASLSMKYPALYMEGIRNAFFKWRVVAIRAFLSVYQSLIFFYFVSSSNLSAKNSEGKIFGLWDVSTMAFTCVVITVNFRLLMNCNSITRWHYISVGGSILGWFVFVFIYSWIRTRYDRQENVYFVIYVLMSTPYFYIMLLLVPVAALFCDFLYLGAQRWFFPYDYQIIQELHRHENDDSGRAQRLEIWNQSPPEETALEITELPRAISKNTGFAFDSPGYESFFATQLGVHTSQNAWDVAKRASVRSKEDIE 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02449 1204 SUPERFAMILY Calcium ATPase, transduction domain A 121 265 IPR008250 -
Trre9g02449 1204 Pfam Phospholipid-translocating P-type ATPase C-terminal 864 1114 IPR032630 -
Trre9g02449 1204 SFLD C1.7: P-type atpase like 387 887 - -
Trre9g02449 1204 NCBIfam phospholipid-translocating P-type ATPase 39 1122 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre9g02449 1204 Pfam E1-E2 ATPase 121 313 - -
Trre9g02449 1204 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 454 674 IPR023299 GO:0000166
Trre9g02449 1204 ProSitePatterns E1-E2 ATPases phosphorylation site. 407 413 IPR018303 -
Trre9g02449 1204 Gene3D - 669 876 IPR023214 -
Trre9g02449 1204 FunFam Phospholipid-transporting ATPase 669 876 - -
Trre9g02449 1204 PRINTS P-type cation-transporting ATPase superfamily signature 836 855 - -
Trre9g02449 1204 PRINTS P-type cation-transporting ATPase superfamily signature 405 419 - -
Trre9g02449 1204 FunFam Phospholipid-transporting ATPase 100 269 - -
Trre9g02449 1204 Pfam Cation transport ATPase (P-type) 508 596 - -
Trre9g02449 1204 Pfam Phospholipid-translocating ATPase N-terminal 26 90 IPR032631 -
Trre9g02449 1204 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 23 1127 - -
Trre9g02449 1204 CDD P-type_ATPase_APLT_Dnf-like 41 996 - -
Trre9g02449 1204 Coils Coil 751 771 - -
Trre9g02449 1204 SUPERFAMILY Calcium ATPase, transmembrane domain M 30 1114 IPR023298 -
Trre9g02449 1204 Gene3D - 533 668 IPR023299 GO:0000166
Trre9g02449 1204 FunFam Phospholipid-transporting ATPase 513 668 - -
Trre9g02449 1204 NCBIfam HAD-IC family P-type ATPase 90 188 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre9g02449 1204 NCBIfam HAD-IC family P-type ATPase 809 915 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre9g02449 1204 Gene3D - 104 269 - -
Trre9g02449 1204 FunFam Phospholipid-transporting ATPase IC 402 414 - -
Trre9g02449 1204 SUPERFAMILY HAD-like 400 892 IPR036412 -
Trre9g02449 1204 SFLD p-type atpase 387 887 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02449 Trre-Chr9 29007547 29025839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02449 2 1203 Primary Pumps ATPases AT1G59820 76.412 0.0 1942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02449 K14802 - gmx:100815547 2096.24