Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02434 ATGTCTCTATCTCGCACGTGCTCGCACTGCGGCAACAACGGCCACAACTCTCGAACATGCAACGACGGAGGAGGAGGTGGAGGTGAAAACAGCATCATGATTTTCGGCGTTAAACTCACCGCTGGAACCACCACCACCACAGCCGCCACAACCAACACCATCCACAATAATCCTTTTAGAAAAAGTGCCAGCATGACTAACCTCTCTCAATATCAACAACAGCCGCCTCAAGATTCCACATCCGCCGATGCCGGTTATGTCTCCGATGACGTTGTTCATGCTTCCGGCCGATCCCGCGAACGCAAACGAGGTGTTCCTTGGACAGAGGAAGAACACAAGTTGTTCCTGTTGGGGTTGCAACAGGTTGGTAAAGGTGATTGGAGAGGAATTTCTAGAAACTTTGTCAAAACTCGTACACCAACTCAGGTTGCAAGTCATGCTCAGAAGTATTTTCTCCGCCGTCATAACCAGAACCGTCGCCGCCGGAGATCTAGTCTCTTTGATATCACAACTGATACGGTGATGGAATCTTCAACTATGATTGATGATGAACAATTTCAGCAAGAAACCGTGGTGCCTCTACCTCCGCCTACCCCCACCGCTTATCCATCCTCACACTATGGTGGAATCCCCGGGACCCCTTTCCCGATTGGTCTTGGTCCGGTAGCATTGCCGGTAATGAGTGGTGAACGAACAGCCAAGCCAATTAGACCAACACCAATGTTGCCTCCTTCTTCTAAGATGGCTAATTTGAACTTGAGAGACAAGGCATCTTCTTCCATTGAGCCTTTCCCATTGTCATTGAAGCTGCATTCTTCACCTCCGTCGAACGATCATTCACCTGAAACTAGCGGCCATTCGTCACCATCGGCTTCGTCGTCAACTTTTAATTCTATGTCTGCAGGGAATTATAGTGGTGGGGGTGGGGATAGCATTATCAGTGTTGCCTGA 951 0.4932 MSLSRTCSHCGNNGHNSRTCNDGGGGGGENSIMIFGVKLTAGTTTTTAATTNTIHNNPFRKSASMTNLSQYQQQPPQDSTSADAGYVSDDVVHASGRSRERKRGVPWTEEEHKLFLLGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTMIDDEQFQQETVVPLPPPTPTAYPSSHYGGIPGTPFPIGLGPVALPVMSGERTAKPIRPTPMLPPSSKMANLNLRDKASSSIEPFPLSLKLHSSPPSNDHSPETSGHSSPSASSSTFNSMSAGNYSGGGGDSIISVA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02434 316 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Trre9g02434 316 ProSiteProfiles Zinc finger CCHC-type profile. 7 20 IPR001878 GO:0003676|GO:0008270
Trre9g02434 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 155 IPR017930 -
Trre9g02434 316 SMART sant 103 153 IPR001005 -
Trre9g02434 316 CDD SANT 106 151 IPR001005 -
Trre9g02434 316 ProSiteProfiles Myb-like domain profile. 99 151 IPR001005 -
Trre9g02434 316 PANTHER TRANSCRIPTION FACTOR KUA1 5 277 - -
Trre9g02434 316 MobiDBLite consensus disorder prediction 265 316 - -
Trre9g02434 316 NCBIfam myb-like DNA-binding domain, SHAQKYF class 102 153 IPR006447 GO:0003677
Trre9g02434 316 MobiDBLite consensus disorder prediction 1 24 - -
Trre9g02434 316 Gene3D - 105 156 - -
Trre9g02434 316 MobiDBLite consensus disorder prediction 270 307 - -
Trre9g02434 316 FunFam transcription factor MYB1R1 105 156 - -
Trre9g02434 316 Pfam Myb-like DNA-binding domain 106 151 IPR001005 -
Trre9g02434 316 ProSiteProfiles SANT domain profile. 102 155 IPR017884 -
Trre9g02434 316 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02434 Trre-Chr9 28841055 28844442 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre9g02434 Myb_DNA-binding 5.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02434 - - tpra:123909419 517.309