Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02411 ATGAGTTCCTCAAACACTTCATCTTCTCCTCTTTCACCTCCACCTCCTTCACTTGAATCAAACAAAACAACGATGAATATGTACAATCATTCGTTATCCTTTTCCAATTCCTCAACATCGGCTACTAAAATTTTTGGCGATAATACTCCTGCAATGAGGAAAGCGATTCAGATCCTAGAAGAACAATTTGGGCATCCCCACATATCATCATCATCATCAAATAATACAAATATTAATCATGTCGTCAACAACACGAAACAAATGACGGTGAATGTGCCTATTGTTTTTTATCCACCTAATATCTCTGCGGACCCAGCATCACAATCACGAGAATTATCACCTCAGACATTCACTTTTGTTGCTACTGCTGGTGTTGATGTTGGAAATGGTAACAAGAACAAAAGGAAGAGGAAAACAATAAATATTAACCATGGTAGAATCTACAGCCTACCACACCCGAAATATGGACCATATACCTGTTCAAAGTGTTTGCAGGTAGTGCCTACATCTCAGAAATTTGCTAATCATGTTACCGAACATTACAAGCTTGATCGTGTAGAAGAGGAAAAAAAGAGAAAGACGTCTGAAACTCAAGAGAGATCAGATCTCCAGTCTGATCAGTCAGAAGTTGTTCCTGTCAACAACGAAAATCTTACATAG 660 0.3833 MSSSNTSSSPLSPPPPSLESNKTTMNMYNHSLSFSNSSTSATKIFGDNTPAMRKAIQILEEQFGHPHISSSSSNNTNINHVVNNTKQMTVNVPIVFYPPNISADPASQSRELSPQTFTFVATAGVDVGNGNKNKRKRKTININHGRIYSLPHPKYGPYTCSKCLQVVPTSQKFANHVTEHYKLDRVEEEKKRKTSETQERSDLQSDQSEVVPVNNENLT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02411 219 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Trre9g02411 219 MobiDBLite consensus disorder prediction 1 23 - -
Trre9g02411 219 Coils Coil 186 206 - -
Trre9g02411 219 MobiDBLite consensus disorder prediction 185 219 - -
Trre9g02411 219 MobiDBLite consensus disorder prediction 185 203 - -
Trre9g02411 219 MobiDBLite consensus disorder prediction 204 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02411 Trre-Chr9 28645030 28645689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02411 143 192 C2H2 Transcription Factor Family AT2G15740 58.000 5.21e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02411 - - mtr:112419833 119.398