Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02399 ATGAGTAGATCTGCTGTTGTACAACAAAGAATCAATTGCTTTAGCACTACTATTGATCCTCAACAGGACAAGATTCAAATTTGTAAGAAATTTAAATCTGATTGGAAGAATGAGCTAGAGAATGAACCATGTGGATTATTCGTTCATCCATCTGGAAACACGGCTTTTACAGAATTGCACCTAGATGAGGATAACTCTTACATGACTTCAGGAAGAATGGTTTCGCTTTTATTTGGTATTAGAGAACTAACTAAAATTGTCATAACCTATCAAATTAAAAACACTTGCTTTGCTTTGACACCTATCCAAGAGGAAGGTGATATTAAGCTTTCAAGTCTTTTCAAAGCTGAAGATGAAGCACTTTTTCCATGTCTGAAAAACACTTACACTTTGCATCCGTTTGAAAATGATCAAATTTTTGGATGGCAACAGAAAATTACTAAGCCATATACAAGTGAGATGAAGAATCAAGTTTTGCACATTCCAAAGAAAACTGCTGAATTTGTACTCAGAGGAAAGAAAGAAATTACCATCAAGACAAAACACAATTTGAATGGCGGCAAATGGACCATTCATACTTACACCAGACCAAATGGTACAAAGGATAAGTCCTTTACTGATGGGTGGTATGGATTTAACCAAGCTAACAATCTTCAAGAAGGAGATCTTTTGCAATTTAAACTATCGGATCCACCTCACGTTATGGTTGTCGAAATTGTTCGTTGCAATCAATCAATATGA 741 0.3522 MSRSAVVQQRINCFSTTIDPQQDKIQICKKFKSDWKNELENEPCGLFVHPSGNTAFTELHLDEDNSYMTSGRMVSLLFGIRELTKIVITYQIKNTCFALTPIQEEGDIKLSSLFKAEDEALFPCLKNTYTLHPFENDQIFGWQQKITKPYTSEMKNQVLHIPKKTAEFVLRGKKEITIKTKHNLNGGKWTIHTYTRPNGTKDKSFTDGWYGFNQANNLQEGDLLQFKLSDPPHVMVVEIVRCNQSI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02399 246 Pfam B3 DNA binding domain 152 239 IPR003340 GO:0003677
Trre9g02399 246 Gene3D - 138 245 IPR015300 -
Trre9g02399 246 ProSiteProfiles B3 DNA-binding domain profile. 144 243 IPR003340 GO:0003677
Trre9g02399 246 SMART B3_2 146 243 IPR003340 GO:0003677
Trre9g02399 246 CDD B3_DNA 159 241 IPR003340 GO:0003677
Trre9g02399 246 SUPERFAMILY DNA-binding pseudobarrel domain 141 236 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02399 Trre-Chr9 28468257 28469208 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre9g02399 B3 4.4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02399 - K10408 tpra:123886203 202.986