Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02397 ATGTCAAGGGCATTTGATTTCATTAAGGATCTGAACAAGGACAAGGATATTTGGAAAATAGCTGTTAGAGTCATTGACTCTTGGATTGTTACCGGGACTAATGGATTTCAACATCTTGAGATGGTTATTGTTGATGGAAAGGGAGATCGAGTTCATGCCATTACTCGATATAAGGAATTTGAGCACTGGAAATCTTTTATTCAGGAGCAGAAGCTTTATACTTTGCACAATTGTCAGGTTTATGACAATGATTCTGGGTTCAAAACTACTCACGGTCCTTTCAAGGTTGTCTTTGGCTCAGGTACCAAATTTGAAGTAGCTGATGATAGCACTGAATTTCCTCCTCATCAGTTTTGCTTCAAAAATTTCAAAGAAGTTCAAGCTGGAAACTTCAAAGTCAACTATTTGTATGAGATCATTGGAGTCCTTCATGAAGTTGTCAAAACCCAAAACCAAGCATCTGGGAAAAAACCATGTACTAATTTAATACTGTCTGATGAAGGTGCCAACATGGTTGATGTCACTCTCTGGGAAGCTTTCTCAATTCAGCTCATGAACTTTATCACTTCTCGCCAAGACAAGGGTCCCATTGTTATAATTCTAACACATGCTCAGTGCAAATTAGGAGACAATGGGAGACCCAACTTCTGTAACAACTGGTCTGGATCTAAGCTTCTAATCAATTTCGACCATCCTGATGTTGAAAAGTTCAAGTCATCGTACAAAGACATTGAGTCTACTCAAGGTGCTACTCAGGATTTTACCCAAGTTTCATCAACTTCTCAAATATCCAACAGTGATCCCTTTTCAAATCTAAGTCAGTTCAAATCAATTGGTCAAATGAAAAACTTTACAAAGGACTCATTCTGCATCACTATTGGAACTGCTAAAAAATTCAATCCTAATCAGTTTGGTTGGTACTATGAAAGTTGTACCAAATGTACCAAATCTTCAAGAGGTCAAGCTGAGAACTATGTCTGCTCATGTGGTGAGGAGGTGAAATGCCCAATTGCTAGATTCAAAGTTGTTGCTCAAGTTGAACATGGAGGCCATAAGGCTGATTTTGTCTTTTGGGACAATGAATGTCAAACTATTCTTGGTCGAACTGCTGAGGACATCCGAGAGACCATGAAAAAGGTGGGTGAGGATGATCCTAAAATATATCCTACTTATCTTGATGACCTCCTCAACAAAGAATTTGCATTCAAAGTGAAGTATCAACCATACTATCGGCAGGCTTCAATTAATCAAATGTCTTCTGACTCTACTCACATCAATAATATCAAGACCCACATTGCTCCATCTAAGGATTCTGCAACATTTTCCAACTCTGCAATACCCACATCTACTACTGAAAACAGTAACACACACAACTCAGATTGTATTCTATCTCAGGCTTCTCCAATGTTTTCAAAATCTATTTCTACTCTTCCTGATCACTCAAATAATTCTGCCAATGATAACACAGAATGCTCAGACTCTATTGCTATACCTGTGGTCTCCCTTTCTGCTACCGATGAAAATGACCTTGATCTTATCTCCAACATCACACCAGCTAAGCGACAATCCGGTGAAATTGAAAAAATATCGGACATTCCTATTCCAACCACAAATGAAGGTCAAGCATCGTCCACAAAGATAAGGATGTCGTCTAGAAAGGGAGGGAAACCCATTAAACTTGAATGA 1686 0.3867 MSRAFDFIKDLNKDKDIWKIAVRVIDSWIVTGTNGFQHLEMVIVDGKGDRVHAITRYKEFEHWKSFIQEQKLYTLHNCQVYDNDSGFKTTHGPFKVVFGSGTKFEVADDSTEFPPHQFCFKNFKEVQAGNFKVNYLYEIIGVLHEVVKTQNQASGKKPCTNLILSDEGANMVDVTLWEAFSIQLMNFITSRQDKGPIVIILTHAQCKLGDNGRPNFCNNWSGSKLLINFDHPDVEKFKSSYKDIESTQGATQDFTQVSSTSQISNSDPFSNLSQFKSIGQMKNFTKDSFCITIGTAKKFNPNQFGWYYESCTKCTKSSRGQAENYVCSCGEEVKCPIARFKVVAQVEHGGHKADFVFWDNECQTILGRTAEDIRETMKKVGEDDPKIYPTYLDDLLNKEFAFKVKYQPYYRQASINQMSSDSTHINNIKTHIAPSKDSATFSNSAIPTSTTENSNTHNSDCILSQASPMFSKSISTLPDHSNNSANDNTECSDSIAIPVVSLSATDENDLDLISNITPAKRQSGEIEKISDIPIPTTNEGQASSTKIRMSSRKGGKPIKLE 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02397 561 Gene3D - 4 106 IPR012340 -
Trre9g02397 561 PANTHER OS03G0429900 PROTEIN 7 488 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre9g02397 561 Gene3D - 111 255 IPR012340 -
Trre9g02397 561 Pfam Domain of unknown function DUF223 40 111 IPR003871 -
Trre9g02397 561 SUPERFAMILY Nucleic acid-binding proteins 119 242 IPR012340 -
Trre9g02397 561 MobiDBLite consensus disorder prediction 534 550 - -
Trre9g02397 561 MobiDBLite consensus disorder prediction 524 561 - -
Trre9g02397 561 SUPERFAMILY Nucleic acid-binding proteins 283 408 IPR012340 -
Trre9g02397 561 SUPERFAMILY Nucleic acid-binding proteins 5 114 IPR012340 -
Trre9g02397 561 MobiDBLite consensus disorder prediction 436 461 - -
Trre9g02397 561 Gene3D - 256 431 IPR012340 -
Trre9g02397 561 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02397 Trre-Chr9 28453406 28456104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02397 1 382 Core DNA Replication Machinery Family AT5G08020 22.333 1.82e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02397 - - tpra:123885385 707.597