Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02387 ATGCAACTTGAGAAGCAAAAAAATGAAATAAAAAGGCAAGAAGCATGGCAAGTCTACGGTGCCTTGCTGTGTGCAGTAGGCCAAAATATGCATGAAAAGGTCAAAAGGTTCAGCAGTTTGCTTCCCCCTCCAACTCGTGCTACTTCAATTGGCAATGGAAAAGCCATGATTGCAATGCCAGAATCGTTTAATGGTATGTGTTTGAATGCAAGTATCACAAAGGACATTGCTTATCATGAATACACCAGGCCAACTTCTATCCAGGGCCAGGCACAGGCTATGCCTATTGCTCTTACTAGAAGGGATCTTTTGGGTTGTGCTGAAACTGGTAGTGGGAAGACTGCAGCTTTCACGATTCCTATGATACAGCATTGCTTGGCCCAGCCTCCAATTCGGCGAGGAGATGGTCCCCTGGCATTAGTTTTGGCTCCTACTAGGGAACTTGCTCAACAAATAGAAAAAGAGGTTGCGGAAATCCTAGAATTTGTTACCAATATCAAGGAAGATAATCCTACACACCTTTGA 525 0.44 MQLEKQKNEIKRQEAWQVYGALLCAVGQNMHEKVKRFSSLLPPPTRATSIGNGKAMIAMPESFNGMCLNASITKDIAYHEYTRPTSIQGQAQAMPIALTRRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVAEILEFVTNIKEDNPTHL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02387 174 Gene3D - 45 168 IPR027417 -
Trre9g02387 174 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 62 163 - -
Trre9g02387 174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 163 IPR027417 -
Trre9g02387 174 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 174 IPR014001 -
Trre9g02387 174 Pfam DEAD/DEAH box helicase 89 164 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02387 Trre-Chr9 28069909 28071613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02387 62 159 Eukaryotic Initiation Factors Gene Family AT3G19760 35.714 2.48e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02387 K12823 - nnu:104594469 169.474