Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02380 ATGGATAACATATATGTTGAGAAAGCCATGATGTATGTCATTGAAATAAAGCATGCGTTTAAAGACGATAAGGACAAATACATGGAGTTTTTAAGCGCAATGACAGATATCAAGGAAAGAAGAATTAATATGGCATGTTTGATGTCAAGAGTGAAGGAATTATTTAAAGGGCACAAAGAATTATTAGTGAAATTTAATACATTTTTGCCGGATGATGTCGAATATAGTGAAGTTACTTTTCAACCAAATAAGTCAGATGATGAATATGATGAAATTTCTTCTCAACCAAAGAAGTCAAATGTGAATTTAGAATATGCTGTCAAATATTTGCGTGATGTGAAGAATCGATTTCAACATGAACCTCATATTTACCAATCGTTTATAGACATAGTGAATATGTATAGATATCAAAATAAGAGTGCTGATGACATTTGGCATATGGTTATTTCACTTTTTGAAGGCCACCAGGATCTTATTGATGGGTTTATTGTTTTTGTTGAGTAA 504 0.3135 MDNIYVEKAMMYVIEIKHAFKDDKDKYMEFLSAMTDIKERRINMACLMSRVKELFKGHKELLVKFNTFLPDDVEYSEVTFQPNKSDDEYDEISSQPKKSNVNLEYAVKYLRDVKNRFQHEPHIYQSFIDIVNMYRYQNKSADDIWHMVISLFEGHQDLIDGFIVFVE 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02380 167 FunFam Paired amphipathic helix SIN3-like protein 98 167 - -
Trre9g02380 167 SUPERFAMILY PAH2 domain 96 166 IPR036600 GO:0006355
Trre9g02380 167 PANTHER SIN3B-RELATED 7 165 IPR039774 GO:0003714
Trre9g02380 167 Gene3D Paired amphipathic helix 97 167 IPR036600 GO:0006355
Trre9g02380 167 Gene3D Paired amphipathic helix 8 70 IPR036600 GO:0006355
Trre9g02380 167 Pfam Paired amphipathic helix repeat 122 165 IPR003822 GO:0006355
Trre9g02380 167 Pfam Paired amphipathic helix repeat 25 69 IPR003822 GO:0006355
Trre9g02380 167 ProSiteProfiles PAH domain profile. 97 167 IPR003822 GO:0006355
Trre9g02380 167 ProSiteProfiles PAH domain profile. 1 72 IPR003822 GO:0006355
Trre9g02380 167 FunFam Paired amphipathic helix protein Sin3 8 70 - -
Trre9g02380 167 SUPERFAMILY PAH2 domain 5 71 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02380 Trre-Chr9 27985660 27986658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02380 1 109 WRKY Transcription Factor Family AT4G12020 29.167 2.10e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre9g02380 PAH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02380 K11644 - tpra:123904389 204.142