Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02379 ATGAGTGGATCTTCAAGTGCAAACATAAAATCTACTGATGATATATTGGCGTATCTAAACGAAATTAAGGATGCATTTAAAGACGAGGTGGAAACGTTTGATGATTTTATATGGGTAATGAGAGATTACAAGGAAAAAAGAATTGATGTTGAAGGTGTTGGATCAAGAGTGAAGGAGTTGTTTAAAGAGCATGAAGAATTGTTATTGAAATTTAATGACTATTTACCGGAAGAATATAAAGTCTCACTTGAATGA 255 0.3216 MSGSSSANIKSTDDILAYLNEIKDAFKDEVETFDDFIWVMRDYKEKRIDVEGVGSRVKELFKEHEELLLKFNDYLPEEYKVSLE 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02379 84 Pfam Paired amphipathic helix repeat 31 75 IPR003822 GO:0006355
Trre9g02379 84 Gene3D Paired amphipathic helix 14 76 IPR036600 GO:0006355
Trre9g02379 84 FunFam Paired amphipathic helix protein Sin3 14 76 - -
Trre9g02379 84 SUPERFAMILY PAH2 domain 11 77 IPR036600 GO:0006355
Trre9g02379 84 ProSiteProfiles PAH domain profile. 5 78 IPR003822 GO:0006355
Trre9g02379 84 PANTHER SIN3B-RELATED 11 83 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02379 Trre-Chr9 27982568 27982909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02379 11 83 WRKY Transcription Factor Family AT4G12020 45.205 1.13e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre9g02379 PAH 6.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02379 - K02377 lja:Lj0g3v0152569.1 69.707