Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02370 ATGTTGCAAGACCACCGTAATAGAGTTTTTCATGACTTCCGCAATGGTGACTGCAGGAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATATATATTCAAGAAGTGAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAATATATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGAACACCTTGGTTTGGCAGTGAACTTGATAACCTATGAGGACCGCTTCAATTTGTATAGGATTGAGCAAGAACTCGGCACTGAAATAAAACAAATTCCTCCTTTCATTGATCAGGCAATATATTGTCGGTGA 315 0.3873 MLQDHRNRVFHDFRNGDCRNLVCTDLFTRGIYIQEVNVVINFDFPKNSEIYLHRVGRSGRFEHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02370 104 CDD SF2_C_DEAD 1 71 - -
Trre9g02370 104 Pfam Helicase conserved C-terminal domain 1 61 IPR001650 -
Trre9g02370 104 SMART helicmild6 1 62 IPR001650 -
Trre9g02370 104 Gene3D - 1 103 IPR027417 -
Trre9g02370 104 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 103 - -
Trre9g02370 104 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 101 IPR001650 -
Trre9g02370 104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 99 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02370 Trre-Chr9 27582773 27583555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02370 1 94 Eukaryotic Initiation Factors Gene Family AT3G19760 45.745 3.46e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02370 K12614 - han:110937653 206.068