Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02369 ATGAACAACAGAGGTAGATATCCACCTGGGATCGGGTTAGGGCAAGGTGGTGGTGGTGGTTTGAACTCGAACACTGGGTTTCAACAGAGGCCACATCAACAACAACAACAACACAACAATGTTGAGGAGGTTGAGAAGACTGTACAGTCTGAAGAAAACGACACTAGTTCACAAGATTGGAAGGCAAGACTAAAGCTTCCACCAGCTGATACATGCTATAGGACAGAGGACGTGACAACAAATGAGTATAAGGATTACTTTTTGAAGCGTGAGCTGCTAATGGGAATATATGAGAAGGGGTTTGAAAGGCCATCCCCAATCCAAGAAGAAAGCATTCCAATTGCCCTTACTGTTGTTATACTGGTTCCAACACAAGAATTGACTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGCAAATTCAAGTTATGGTCACAACAGGTGGTACCAGCCTGAAAGATGACATTATGCGTTTATATCAACCGGTTCATCTGCTAGTTGGTACTCCAGGAAGAATATTGGATCTTGCAAAGAAGGGTGTTTGCGTTCTAAAAGATTGTTCTATGCTTGTCATGGATGAGGCGGAAAAACTTCTCTCCCAGGAGTTCCAACCTTCAATAGAGCAGCTGATTAAATTCTTCCCTCAAACCGTCAAATCCTAA 672 0.4256 MNNRGRYPPGIGLGQGGGGGLNSNTGFQQRPHQQQQQHNNVEEVEKTVQSEENDTSSQDWKARLKLPPADTCYRTEDVTTNEYKDYFLKRELLMGIYEKGFERPSPIQEESIPIALTVVILVPTQELTLQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEAEKLLSQEFQPSIEQLIKFFPQTVKS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02369 223 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 32 115 - -
Trre9g02369 223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 223 IPR014001 -
Trre9g02369 223 SMART ultradead3 100 222 IPR014001 -
Trre9g02369 223 Gene3D - 22 113 IPR027417 -
Trre9g02369 223 MobiDBLite consensus disorder prediction 18 43 - -
Trre9g02369 223 MobiDBLite consensus disorder prediction 44 59 - -
Trre9g02369 223 Gene3D - 114 223 IPR027417 -
Trre9g02369 223 MobiDBLite consensus disorder prediction 1 60 - -
Trre9g02369 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 219 IPR027417 -
Trre9g02369 223 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
Trre9g02369 223 Coils Coil 34 54 - -
Trre9g02369 223 Pfam DEAD/DEAH box helicase 116 220 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02369 Trre-Chr9 27578987 27582431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02369 83 218 Eukaryotic Initiation Factors Gene Family AT3G19760 30.588 7.24e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02369 K12614 - gmx:106794117 302.753