Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02346 ATGAACCTTTTCACAACTAACATTCCATCATTTCCGGCTGGGCTGAAAGTCCTTGCAGTTGATCATGATACAGATGATCTCTTCACTATTCACCACATCTGCAATCGATTACGCTATCAAGTTACCACATGTTGTACTATTTCTGAGGCAATGGATCACTTGTTACAACAAGGTTTTGACATCATTCTCATTGAAACTCATATTCCACACCAGGATACTTATGCATTTGTTCAACAAATGACTTCACTTTTGAAAATTCCAGTCATTATGATGTCTGTTGATAACCAACCATGTTCTGTTATGAATTCCATTTCCAACGGGGCTTGCAGTTATTGGACTAAACCATTACATGAGAATCTATTCAAGAATATGTGGCAACATGTTGTGCGAAAGGCTTTCATCCAAACTGATCCACGTCAACTCATCGAGGCTAAAGGGCTTAAAAAGCGAGGAAGAGATGATGATCATGTTTCAAAACAGCCTCTTGCAAAGAAAACTCGTCTCGAGGCTAAAGGGCTTAAAAAGCAAGGAAGAGATGATGTTGATGTTTCAAAACAGCCTCTTGCAAAGAAAACTCGTCTCTCTTGGACACTTGATTTGCACCAAAAATTTCTGTCCGCTGTGAATCATCTTGGGATTAACAATGCAGGGCCTAAAAAAGTTCTTAAGATTATGGATTGTCCTGGCTTGACATTAGGGCATGTAGCTAGTCATTTGCAGAAATATAGAAAGTATTTAAAAGGTGAGATAAAAAAGTCGAAGTTCAATGAATTTGAACTTCCAGGTCAGAAGGACAATGAAACACAATACTCAATGACGACACAGGATCAATGTCATGATGATAAAAGTCTCGCAGCACAACATTCGACAGAAATTGATTTTGATTTTCAAGGTCAGAAGCACAATGAAACGCAATACTCAATGACAGCACAGGATCAATGTCATGATGATAAAAGTCCTTCAGAACAACATTCGACAGAAATTGATTTTGCTTTTCAAGGTCAGAAGAACAATGAAACACAATACTCAATGACGGCACAAGATCACTGTCACGATAAAAGCCCTGCAGAACAGCATTGGACAGAAATTGACGAACCCGACATATTTTTTGACTTGACTGATTTATTCCCCGATTTTAACGATGATATACACAATCTGCTGTCGTGA 1167 0.3839 MNLFTTNIPSFPAGLKVLAVDHDTDDLFTIHHICNRLRYQVTTCCTISEAMDHLLQQGFDIILIETHIPHQDTYAFVQQMTSLLKIPVIMMSVDNQPCSVMNSISNGACSYWTKPLHENLFKNMWQHVVRKAFIQTDPRQLIEAKGLKKRGRDDDHVSKQPLAKKTRLEAKGLKKQGRDDVDVSKQPLAKKTRLSWTLDLHQKFLSAVNHLGINNAGPKKVLKIMDCPGLTLGHVASHLQKYRKYLKGEIKKSKFNEFELPGQKDNETQYSMTTQDQCHDDKSLAAQHSTEIDFDFQGQKHNETQYSMTAQDQCHDDKSPSEQHSTEIDFAFQGQKNNETQYSMTAQDHCHDKSPAEQHWTEIDEPDIFFDLTDLFPDFNDDIHNLLS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02346 388 Pfam Response regulator receiver domain 17 121 IPR001789 GO:0000160
Trre9g02346 388 Pfam Myb-like DNA-binding domain 194 243 IPR001005 -
Trre9g02346 388 ProSiteProfiles Response regulatory domain profile. 16 129 IPR001789 GO:0000160
Trre9g02346 388 FunFam Two-component response regulator 188 249 - -
Trre9g02346 388 Gene3D - 12 135 - -
Trre9g02346 388 SUPERFAMILY CheY-like 14 142 IPR011006 -
Trre9g02346 388 SUPERFAMILY Homeodomain-like 189 248 IPR009057 -
Trre9g02346 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 247 IPR017930 -
Trre9g02346 388 NCBIfam myb-like DNA-binding domain, SHAQKYF class 191 244 IPR006447 GO:0003677
Trre9g02346 388 SMART REC_2 15 125 IPR001789 GO:0000160
Trre9g02346 388 MobiDBLite consensus disorder prediction 146 184 - -
Trre9g02346 388 Gene3D - 188 248 - -
Trre9g02346 388 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 302 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02346 Trre-Chr9 27034524 27036093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02346 11 247 Response Regulator Gene Family AT4G31920 35.565 3.19e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre9g02346 Response_reg 1.6e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02346 - K14491 tpra:123909232 408.297