Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02345 ATGGAGACAAACGGTGTCGTTTCTATTGGTGTTGATTCTCATGAAGTTCATGTTTTGGCTGTTGATGATAGTCTTGTTGATCGGAAAGTTATTGAACGGTTGCTCAAAATTTCAGCTTGTAAAGTTACTGCTGTGGATAGTGGAATGAGAGCACTACAATTTCTGGGGTTGGATGAGCAAAGAAAGACTTGTGATTCTGAATCAGATGATTTTGTGCCGGGTTTGAAGGTGGATCTAGTAATTACAGATTATTGCATGCCAGGAATGACTGGTTATGAGTTGCTTAAGAAAATCAAGGAATCGTCTACTTTTAAAGAAATTCCAGTAGTGATTATGTCTTCTGAAAACATTTTGCCACGCATAGACAGATGTTTGGAGGAAGGAGCAGAGGATTTTATAGTGAAGCCAGTGAAATTATCAGACGTGAAACGTTTGAAGGGTTACATGACAACTAGGGACGTTAGAGCGGGAAGCCAAGAAAACAGAGAACTTAACGTTAACGATAACGGTGGAGGTAGTATAGTAGGAATCAACAACAAAAGAAAGCTAGAAGAAACATCTGATCTCTCATCATCACCACCGTCCAATTCATCATCTTCATCACCATCGTCCATTTCATCATCACCATCACCTTTATCATCTCCTATGTCTTCACCCGACATGCTTGATTCTCCAATCCGACGGCTTAAAATGACTGGCACCGAATGA 708 0.4025 METNGVVSIGVDSHEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGMRALQFLGLDEQRKTCDSESDDFVPGLKVDLVITDYCMPGMTGYELLKKIKESSTFKEIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYMTTRDVRAGSQENRELNVNDNGGGSIVGINNKRKLEETSDLSSSPPSNSSSSSPSSISSSPSPLSSPMSSPDMLDSPIRRLKMTGTE 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02345 235 CDD REC_typeA_ARR 18 145 - -
Trre9g02345 235 SUPERFAMILY CheY-like 16 144 IPR011006 -
Trre9g02345 235 MobiDBLite consensus disorder prediction 184 235 - -
Trre9g02345 235 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 192 IPR045279 GO:0009736
Trre9g02345 235 MobiDBLite consensus disorder prediction 188 220 - -
Trre9g02345 235 Pfam Response regulator receiver domain 18 142 IPR001789 GO:0000160
Trre9g02345 235 ProSiteProfiles Response regulatory domain profile. 17 150 IPR001789 GO:0000160
Trre9g02345 235 Gene3D - 16 191 - -
Trre9g02345 235 SMART REC_2 16 149 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02345 Trre-Chr9 27027620 27029083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02345 11 227 Response Regulator Gene Family AT1G59940 56.422 1.04e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre9g02345 Response_reg 5.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02345 K14492 - gmx:100779833 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02345 9 27027620 27029083 Trre9g02345 9 27027620 27029083 ECH