Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02309 ATGGAAAAGGAAATGTGTGATATTTCTGTTGAGAAAAGGCTTAGACTATTTGGTTTTGAGCTAAATCCAACAAAGAATAATAGTGAAGGACTTGTCAAAGAGTCTAATGAAGGAGATGAAAGTGTAAATTCATCTAACTCAATTTCATCAGGAGGAGAGAAAATTGTCCACGATGAAAAAAATTCATCTAGAGACCAAGATGAGAGAAAATTTGAGTGCCAATATTGTTTCAAAGAATTTGCAAACTCACAAGCATTAGGAGGCCATCAAAATGCACACAAAAAAGAAAGAATGAAGAAGAAAAGATTGCAACTTCAAGCTAGGAAAGCTAGCATAAATTATTACCTACAACCTTTTCAAAAAAATCATCATGGTTTTTCTTACCATGGTTCTGATACTCATTGGTTTTATGATCCTTCTTCTTATAATTCTGAATTTTCTTTGTGTGAAGATCAATCTCAAATTAGTTTTAAGTCAAAAAATGTTCATGATACCAATTCTAGTTGGTATTCTCTTCCTTCTCATGTTCCTAGTTCCCAACAAGATACTTGCATGTTTACTCTTTCTAATATTGATGATAGACCTTTCATTTTCAACCCTTCTTCAAACCAAATTCATAGTAAAGATTTAGATCTTCAATTAGGACTCACTTTGGAGTCAAATTCAATAAGCTCTTTAAAAAGGACATAG 690 0.3203 MEKEMCDISVEKRLRLFGFELNPTKNNSEGLVKESNEGDESVNSSNSISSGGEKIVHDEKNSSRDQDERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASINYYLQPFQKNHHGFSYHGSDTHWFYDPSSYNSEFSLCEDQSQISFKSKNVHDTNSSWYSLPSHVPSSQQDTCMFTLSNIDDRPFIFNPSSNQIHSKDLDLQLGLTLESNSISSLKRT 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02309 229 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Trre9g02309 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Trre9g02309 229 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
Trre9g02309 229 MobiDBLite consensus disorder prediction 22 65 - -
Trre9g02309 229 FunFam zinc finger protein 5 44 124 - -
Trre9g02309 229 Gene3D Classic Zinc Finger 43 124 - -
Trre9g02309 229 PANTHER ZINC FINGER PROTEIN 5 10 219 IPR044299 GO:0010090
Trre9g02309 229 MobiDBLite consensus disorder prediction 22 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02309 Trre-Chr9 26204131 26204820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02309 68 114 C2H2 Transcription Factor Family AT1G68360 72.917 4.18e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g02309 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02309 - - gmx:100799857 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02309 9 26204131 26204820 Trre9g02309 9 26204131 26204820 ECH