Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02292 ATGAATGAGAAGCTAGAAGAAGCCAACTGGGCCAAACTCAATGGAGAAGTGCAGCATAGCTCACAGAATGAGAAGCTACAAGAAGCAAACTGGGCCAAACTCAATGGAGAAGTGCATAGCACACAGGTTAATCTTGATTTGATTCTGAGGGAAGCCGAGACAAACAGGTTGAATATCAGTGTCAGTCCAAGTGGCGACGCTGATTTCAAGACTATCGCAGAGGCGATCAACAGCATTGCCACACCAAATACTAGAAGAGTGGTCATTTCCATTGCTCCCGGTCTTTACAGGGAGAAACTTTTGATCCCCAGCACATTACCTTTCATCACATTCTTGGGGGACACGATCAATAAACCAAAAATTACCGGAAATGCTAAAGCGTCTGACATCGGGAGTGATGGAAAACCGCTTAAGACATACAATACTGCAACTGTTGCTGTGGATGCTGCCTACTTCATTGCAATGAACATAATATTTGAGAATACAGCATCACCTCGTATAGGATCAAGTAAGGATCAAGCAGTAGCTCTTCGTCTGTCGGGAGACAAATGCGCGGTTTACAATAGCGAAGTGTATGGATTTCAAGACACTCTATATGATCACAAAGGACTCCATTACTTCAAAAATTGCAAAATTCAAGGCACGGTTGATTTCATCTTCGGAGATGGAAAGTCCCTATACGAGGGCTGCACTATAATTTCCATAGCCCAAAATTCGGGCTTTGTCACAGCACAAAAGCGCGAAGTTTTGAAAGGTGACACTGGGTTTTCAATATTAAACAGCAAAGTAGTAGGAAGTGGAAGTGTTTATTTGGGAAGAGCGTGGGGAAATTACTCGAGAGTAATTTTTTCCTACACCTACATGGATAGTCTGGTTCTCCCTGAAGGATGGGTCGACAGTATGGACAACAAAGACCATCATAACTTGACCGTATTCTATGCAGAATATAAGTGCAGCGGACCGGGATCAAGCTTTTCTAGAAGACCTAGATGGATACGGAGATTGTCCTTCAAAGATGCCCAAGAATTTATCGGAGTCCAATTCATTTACGGGGATACATGGCTTAGCCCACCACTGTGA 1080 0.4343 MNEKLEEANWAKLNGEVQHSSQNEKLQEANWAKLNGEVHSTQVNLDLILREAETNRLNISVSPSGDADFKTIAEAINSIATPNTRRVVISIAPGLYREKLLIPSTLPFITFLGDTINKPKITGNAKASDIGSDGKPLKTYNTATVAVDAAYFIAMNIIFENTASPRIGSSKDQAVALRLSGDKCAVYNSEVYGFQDTLYDHKGLHYFKNCKIQGTVDFIFGDGKSLYEGCTIISIAQNSGFVTAQKREVLKGDTGFSILNSKVVGSGSVYLGRAWGNYSRVIFSYTYMDSLVLPEGWVDSMDNKDHHNLTVFYAEYKCSGPGSSFSRRPRWIRRLSFKDAQEFIGVQFIYGDTWLSPPL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02292 359 FunFam Pectinesterase 54 357 - -
Trre9g02292 359 SUPERFAMILY Pectin lyase-like 57 357 IPR011050 -
Trre9g02292 359 ProSitePatterns Pectinesterase signature 2. 212 221 IPR033131 -
Trre9g02292 359 Gene3D - 54 357 IPR012334 -
Trre9g02292 359 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 51 356 - -
Trre9g02292 359 Pfam Pectinesterase 58 352 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02292 Trre-Chr9 26029919 26039021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02292 59 357 Carbohydrate Esterase AT5G47500 44.333 3.67e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02292 K01051 - tpra:123885915 463.766