Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02193 ATGGCTAATGAAACTAAGTCAAATGGAACGTCTTTTTCTTTGAATATAGAGAAAAAAGATTCTGAAAAAGCTTCTGCTCCGTCTCCATATTCATCTTTATTACAATCTGAGGACACGGTTCCTCCAGAAAAAGCACCATCAAATTCTCCACCACCGTCGCCAACAGCATCGCCACCACCTTCACCGCCGCCACAAGCGCAATCTCCACCGCCACAATCTTCGTCACCTCCATCAAAAGTTTCGCCACCACCTTCTCAATCGTCACCGCCTACAACACCAACATTGTCTCCGCCGCCTCCATCATTTTCACCACCACCCCCAGTCGGCAATAATTCTCCCCCTCCTTCACAATCAAATTCCCCTCCTCACGTTCCGTCCTTACCTCCGCCTTCTTCCAAAACTAGTCCTCCCCCGCCGCAAAATCGTCCTTCACCGTCACAATCATCACCAGATTCCCCAAGCTCCCATTCAAAACCAAGCTCTCCTCCTTCCAAAAGTAACTCTCTATCCAAACAGCACTCCTCCAATGATAATACAGGACAATACATTGGTTTTGCTGTTGCAGCAGTTTTTGTTCTCGCATTTATTGCATTCATTCTTTTTTACATATTAAAAAGAAAAGACAGACGAGGGAATTTCTATGGTATGCCGCCACCCCATATGAAACCTCAAATGAATGGAGATGTGCATTATTATGTAGAGTCGCCGGGTTTTGGATATAGTCATAGGAACAATATAGGTGCAATGCAACATACGAGAACTCCTTCAGACAAAACACAACAACAAATGAGTGGTGGCCAAATGGTTTTTAGTTACGACAAAGTTGCTGAAATTACTAACGGGTTTTCAAGTGAAAACGTGATAGGAGAAGGAGGTTTTGGGTGTGTTTATAAGGCTTCAATGCCCGATGGTAGAATTGGAGCGGTTAAGTTGTTGAAGGCTGGTAGTGGTCAAGGAGAAAGAGAGTTTAGAGCAGAGGTTGATACTATTAGTCGTGTTCATCATCGACATTTGGTATCTTTGATTGGTTATTGTATATCTGAGCAACAAAGAGTTCTCATTTATGAGTTTGTTCCTAATGGAAATCTTGATCAACATTTGCATGGAAGTGCATGGAATGTTTTGGATTGGCCCAAGAGAATGAAGATAGCAATTGGTGCTGCAAGGGGCCTTGCATATCTACATGAAGGCTGCAACCCAAAGATTATTCACAGAGATATTAAGTCATCAAATATACTTTTGGACAATGCTTACGAGGCACAGGTTGCAGACTTTGGACTTGCCAAATTAACCGATGCTGCTAATACTCATGTATCAACTAGGGTGATGGGTACTTTTGGCTACATGGCTCCAGAGTATGCAACGAGTGGAAAACTAACAGATAGATCGGATGTTTTCTCATTTGGAGTTGTGCTTCTTGAGCTTATAACTGGAAGGAAACCTGTTGATCCAACACAGCCTGTGGGAGATGAGAGTTTGGTTGAGTGGGCCCGTCCACTTCTCGTTCGTGCAATTGAAACCGGTGACTTTAGTGAACTAGTTGACCCAAGACTTCAACGACAATATAGTGACAGTGAAATGGTTAGAATGATTGAAGCAGCTGCAGCATGTGTTCGGCATTCTGCCCCAAAACGACCGCGGATGGTTCAGGTTGCAAGAGCCTTGGACAGTGGAGATCAACTATATGATCTATCGAACGGGGTGAAGTATGGTCAGAGCACAATTTATGATTCTGATAAGTATCATGAAGACCTAATGAGATTCAAAAGGATGGCTAATGGAAGTTTTGGTGAGTCTGAATTTGATATGTACAGCACAGAATACAGTTCAAGAGACATATCTAGATCTGCATTTGTGCCATCACACACTTCAAGTGATGATTCACAAATTAGACCTATCCAAAACTAA 1908 0.4287 MANETKSNGTSFSLNIEKKDSEKASAPSPYSSLLQSEDTVPPEKAPSNSPPPSPTASPPPSPPPQAQSPPPQSSSPPSKVSPPPSQSSPPTTPTLSPPPPSFSPPPPVGNNSPPPSQSNSPPHVPSLPPPSSKTSPPPPQNRPSPSQSSPDSPSSHSKPSSPPSKSNSLSKQHSSNDNTGQYIGFAVAAVFVLAFIAFILFYILKRKDRRGNFYGMPPPHMKPQMNGDVHYYVESPGFGYSHRNNIGAMQHTRTPSDKTQQQMSGGQMVFSYDKVAEITNGFSSENVIGEGGFGCVYKASMPDGRIGAVKLLKAGSGQGEREFRAEVDTISRVHHRHLVSLIGYCISEQQRVLIYEFVPNGNLDQHLHGSAWNVLDWPKRMKIAIGAARGLAYLHEGCNPKIIHRDIKSSNILLDNAYEAQVADFGLAKLTDAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPVGDESLVEWARPLLVRAIETGDFSELVDPRLQRQYSDSEMVRMIEAAAACVRHSAPKRPRMVQVARALDSGDQLYDLSNGVKYGQSTIYDSDKYHEDLMRFKRMANGSFGESEFDMYSTEYSSRDISRSAFVPSHTSSDDSQIRPIQN 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02193 635 MobiDBLite consensus disorder prediction 1 15 - -
Trre9g02193 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672|GO:0006468
Trre9g02193 635 MobiDBLite consensus disorder prediction 25 43 - -
Trre9g02193 635 MobiDBLite consensus disorder prediction 147 175 - -
Trre9g02193 635 Gene3D Phosphorylase Kinase; domain 1 243 357 - -
Trre9g02193 635 Gene3D Transferase(Phosphotransferase) domain 1 358 569 - -
Trre9g02193 635 SMART serkin_6 282 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02193 635 Pfam Protein tyrosine and serine/threonine kinase 285 554 IPR001245 GO:0004672|GO:0006468
Trre9g02193 635 SUPERFAMILY Protein kinase-like (PK-like) 258 555 IPR011009 -
Trre9g02193 635 MobiDBLite consensus disorder prediction 44 146 - -
Trre9g02193 635 MobiDBLite consensus disorder prediction 1 175 - -
Trre9g02193 635 FunFam proline-rich receptor-like protein kinase PERK8 358 570 - -
Trre9g02193 635 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 190 599 IPR047117 -
Trre9g02193 635 CDD STKc_IRAK 288 556 - -
Trre9g02193 635 ProSiteProfiles Protein kinase domain profile. 282 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02193 635 FunFam Proline-rich receptor-like protein kinase PERK8 254 357 - -
Trre9g02193 635 PRINTS Proline rich extensin signature 76 92 - -
Trre9g02193 635 PRINTS Proline rich extensin signature 39 51 - -
Trre9g02193 635 PRINTS Proline rich extensin signature 96 113 - -
Trre9g02193 635 PRINTS Proline rich extensin signature 51 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02193 Trre-Chr9 23558317 23561860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02193 184 612 Trihelix Transcription Factor Family AT1G70460 58.797 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trre9g02193 PK_Tyr_Ser-Thr 2.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02193 - - tpra:123908299 757.673