Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02177 ATGTCAACACTTAACCATCTTTTTGATCTTCCAGAACAAATATGTTATGTACAATGTGGATTCTGTAACACCATTTTAATGGTAAGTGTTCCATGCAGCAGTTTATCAATGGTTGTGACAGTAAGATGTGGTCACTGCACAAGTCTTTTATCTGTTAATATGATGAAAGCTTCTTTTGTCCCTTTTCACCTTTTAGCATCTCTTACTCATCTTGAGCAAAAAGAAATTAGTAGTCCAGATGAAGATGCAAACAAGGGTTTGAACAATAATAGTTCATCCATGATGACTTATTCTGATTGTGAGGAAGATGATGTAATTCCAATCACCAATGTAGTCAATAAACCACCAGAGAAGAGACAAAGAACACCATCAGCTTATAACCGGTTCATCAAAGAAGAGATTAAAAGGCTTAAGGCTCAACATCCTGACATGGCTCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTGCCCCCCAATTCAGTTCAAAGGAGATGAAGAAAGCTGTAACCAGACAGATCAACTAGTGGATCTTGACTCCCAAGTGGACCCTCATGATGCTGAGGTGAATGAAGAAGAAAATGGATTCCGTGGAAGAAAGGTACCAAGAAATTCCATCTTGGAAAGGACACCATTTGAGTGA 651 0.3856 MSTLNHLFDLPEQICYVQCGFCNTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLEQKEISSPDEDANKGLNNNSSSMMTYSDCEEDDVIPITNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAQHPDMAHKEAFSTAAKNWANCPPIQFKGDEESCNQTDQLVDLDSQVDPHDAEVNEEENGFRGRKVPRNSILERTPFE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02177 216 Gene3D High mobility group box domain 109 194 IPR036910 -
Trre9g02177 216 FunFam Axial regulator YABBY 4 108 175 - -
Trre9g02177 216 Pfam YABBY protein 11 166 IPR006780 GO:0007275
Trre9g02177 216 PANTHER PROTEIN YABBY 6-RELATED 2 176 IPR006780 GO:0007275
Trre9g02177 216 MobiDBLite consensus disorder prediction 182 209 - -
Trre9g02177 216 CDD HMG-box_SF 121 162 - -
Trre9g02177 216 MobiDBLite consensus disorder prediction 182 216 - -
Trre9g02177 216 SUPERFAMILY HMG-box 109 162 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02177 Trre-Chr9 23375100 23377556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02177 2 216 C2C2-YABBY Transcription Factor Family AT1G23420 57.709 2.77e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre9g02177 YABBY 6e-64 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02177 K25796 - gmx:100804172 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02177 9 23375100 23377556 Trre9g02177 9 23375100 23377556 ECH