Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02148 ATGAGTACAAATGAGAGACTTAAAGAGGATGAAGCAATAAGTTATTTCCAACAACTAATCAATGTTGTTGATTACTGGGATAGTAGAGGCGTGTATTACCGAGATTTGAAGCCAGAGAATCTTCTGTTGGACGTAAATGGTGTTCTTAAAGTTCCGGATTTTGGATTAAGTACATATTCACAGCTTGGTAGGGCTGAGTTCACATGTCTGCCTTGGTTTTTGCCCGAGAGGATAAAAATTCTGGAAATCTTGGAAGATGAATGGTTCATATAA 273 0.3773 MSTNERLKEDEAISYFQQLINVVDYWDSRGVYYRDLKPENLLLDVNGVLKVPDFGLSTYSQLGRAEFTCLPWFLPERIKILEILEDEWFI 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02148 90 Gene3D Transferase(Phosphotransferase) domain 1 1 79 - -
Trre9g02148 90 Pfam Protein kinase domain 3 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02148 90 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 60 - -
Trre9g02148 90 ProSiteProfiles Protein kinase domain profile. 1 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02148 90 SUPERFAMILY Protein kinase-like (PK-like) 4 64 IPR011009 -
Trre9g02148 90 ProSitePatterns Serine/Threonine protein kinases active-site signature. 31 43 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02148 Trre-Chr9 22841350 22841836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02148 1 66 CBL-interacting serine-threonine protein kinases AT1G30270 71.212 4.38e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre9g02148 Pkinase 6.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02148 - - pvu:PHAVU_009G257000g 94.7449