Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02139 ATGGATGAAGAACAATCTAAAACTCATACACAAACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAAGGGAATTGTTTCTGTCAAAGGAGATGTGTATAGCTATGGGATTATGCTAATGGAAATCTTTACAAGAAGAAAACCAACAGATGACATGTTTGTTGTCGGACTAAGTTTGAAGACATGGGTTAGTGGATCATTGCCTAGTTCTATTATGGAGGTCTTAGATTCTAATTTAGTCCAACAACTTGGGGAACAAATTGATGACATGCTGACTTACATGTCATCTATTTTTGGTTTAGCCTTGAATTGTTGTGAAGATTTACCTGAAGCAAGAACTAATATGGCAGATGTTATTGCATCCCTAATCAAAATCAAGACTTTGGTTCTTGATGTAAACAATCTCTAG 417 0.3597 MDEEQSKTHTQTLATIGYLAPEYGSKGIVSVKGDVYSYGIMLMEIFTRRKPTDDMFVVGLSLKTWVSGSLPSSIMEVLDSNLVQQLGEQIDDMLTYMSSIFGLALNCCEDLPEARTNMADVIASLIKIKTLVLDVNNL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02139 138 ProSiteProfiles Protein kinase domain profile. 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02139 138 Pfam Protein tyrosine and serine/threonine kinase 2 124 IPR001245 GO:0004672|GO:0006468
Trre9g02139 138 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 1 127 - -
Trre9g02139 138 SUPERFAMILY Protein kinase-like (PK-like) 6 130 IPR011009 -
Trre9g02139 138 Gene3D Transferase(Phosphotransferase) domain 1 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02139 Trre-Chr9 22646605 22647203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02139 14 129 Receptor kinase-like Gene Family AT3G47570 36.975 1.60e-23 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre9g02139 PK_Tyr_Ser-Thr 9.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02139 - K13420 mtr:25502843 231.876