Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02124 ATGTCTTCTGCTCGCAGTGATAACAATAATAATAATAATAATAATAATGTTGTTGTTGTTGATGATGATCATGGTGCAAAACAACAGAACATGAAATCTTTTTCATGTCATGTTTGCAACAAACCTTTTTCATCAAACAAATCTTTGAACGGACATATGAGATCGCATAATCAAAATGGTTTCAAGAAACAGAACAACGAGATGAATCATCAAGATCAGTTACCACTGGCTATTGACTTGTCAAATTATTTGCCTCCAATAACATACAAGACCAATAAACGGCGCAACAGATTTTTTATTGACGATGATGCTCGTAACGCTGCTCAAACATTGTTGGATATGTCGCGCGGAAAGTTTCTGAATTTCGATGATGTGAGCCGTGATTGTAAAAGGATCAAGCTTTCCAATTAA 411 0.3504 MSSARSDNNNNNNNNNVVVVDDDHGAKQQNMKSFSCHVCNKPFSSNKSLNGHMRSHNQNGFKKQNNEMNHQDQLPLAIDLSNYLPPITYKTNKRRNRFFIDDDARNAAQTLLDMSRGKFLNFDDVSRDCKRIKLSN 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02124 136 Pfam C2H2-type zinc finger 34 56 - -
Trre9g02124 136 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Trre9g02124 136 Gene3D Classic Zinc Finger 7 80 - -
Trre9g02124 136 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 56 IPR013087 -
Trre9g02124 136 FunFam Zinc finger protein 31 57 - -
Trre9g02124 136 SUPERFAMILY beta-beta-alpha zinc fingers 32 59 IPR036236 -
Trre9g02124 136 SMART c2h2final6 34 56 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02124 Trre-Chr9 22510870 22511280 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g02124 zf-C2H2_6 4.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02124 - K09228 cam:101497742 68.5514