Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02121 ATGGAATCAAAAAAAGATAACAAAAAAGAGTTTTCAAGCGACGATGAATCATCACCAAGAACAATACTAGAATGCCCTGTTTCAGAAACAGAGTCAGACAATAGTGGAAGCAGCAGTTTCATTTCTGACTCGTCGGAAAATTCACCGCCACCGGAGCTTGTAGCCGGAGGAAAATCAAATGGAAAAGAAAATCAGATGCAGCATCATATGAAATCAATGATGGATGTTTTCAAGTTTAAATCAGTGAAAAAATTAACAGCTATTCCTATTCTTGTTGCTGCTAGCCATGAACTTACTAAGAAAGGATTGACTAAGAAATTGGCTCGTATTCGAAGTGCTGAAGAATGTATTGATATTGGTTCTATTCCTACAAAACCTTCTTGGAGGAATTTTGATTATGCAGAACTTGCTGCTGCTACTAATGATTTCAGTCCTGAGAATTTGGTTGGAAAAGGTGGTCATGCTGAAGTATACAAAGGACAATTATCAGATGGTCAAGTCGTAGCAGTAAAGAGACTAATGAACGACGACAAAGATTTTGCCGATAGAGCTGGCGATTTCTTGGCAGAGTTAGGAATCATTGCACACATAAACCACTCAAATGCAACACGCCTTGTTGGCTTTGGTATCGATCGTGGCCTCTACTTCGTTCTACAATTAGCTCAACACGGAAGTCTTTCTTCTTTGCTATTCGGTTCTGAATGCTTAGAGTGGAAGATAAGGTACAAGGTAGCGATTGAAGTTGCGGAAGGGTTGCATTATCTTCATCAAGATTGCCCGAGACGAATCATTCATAGGGACATCAAAGCCTCAAACATATTACTCAAGGATAATTATGAAGTTGAGATATCAGATTTTGGACTGGCAAAATGGCTTCCAAATAATTGGGCACACCATGTTGTTTTCCCTATAGAAGGCACATTTGGGTATTTGGCTCCAGAGTACTTTATGCATGGCATTGTGGATGAAAAGACTGACATATTCGCGTTCGGCGTTTTGCTACTTGAACTCATAACCGGTCGTCGTGCAGTTGATTCAGATAGCAGGCAAAGTATTGTGATTTGGGCCAAACCACTGCTTGACTCAAACAATATCAAAGAGCTGGCAGATCCAAGATTAGAAGGGAATTATGATCCTATTGAAATGAAGCGTGCTATGGCGATAGCTTCCTTGTGCATCCACCATTCATCTTCCAAGAGGCCATTCATGAAACAAGTCGCACAACTACTGAAGGGCGAGGAAGCAATTATAGATTCCAACTCAAAATCAGTTATGATAGAGGCTTGTGACCTAGAAGATTACACTTGTTCTAACTACTTGAAGGACCTTAACCGCCATAGGGAACTAATCATGGAGTGA 1359 0.404 MESKKDNKKEFSSDDESSPRTILECPVSETESDNSGSSSFISDSSENSPPPELVAGGKSNGKENQMQHHMKSMMDVFKFKSVKKLTAIPILVAASHELTKKGLTKKLARIRSAEECIDIGSIPTKPSWRNFDYAELAAATNDFSPENLVGKGGHAEVYKGQLSDGQVVAVKRLMNDDKDFADRAGDFLAELGIIAHINHSNATRLVGFGIDRGLYFVLQLAQHGSLSSLLFGSECLEWKIRYKVAIEVAEGLHYLHQDCPRRIIHRDIKASNILLKDNYEVEISDFGLAKWLPNNWAHHVVFPIEGTFGYLAPEYFMHGIVDEKTDIFAFGVLLLELITGRRAVDSDSRQSIVIWAKPLLDSNNIKELADPRLEGNYDPIEMKRAMAIASLCIHHSSSKRPFMKQVAQLLKGEEAIIDSNSKSVMIEACDLEDYTCSNYLKDLNRHRELIME 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02121 452 Gene3D Transferase(Phosphotransferase) domain 1 222 430 - -
Trre9g02121 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Trre9g02121 452 PANTHER OS08G0249100 PROTEIN 6 422 IPR046958 -
Trre9g02121 452 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 118 220 - -
Trre9g02121 452 Pfam Protein kinase domain 146 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02121 452 SUPERFAMILY Protein kinase-like (PK-like) 127 411 IPR011009 -
Trre9g02121 452 ProSiteProfiles Protein kinase domain profile. 143 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02121 452 MobiDBLite consensus disorder prediction 23 49 - -
Trre9g02121 452 Gene3D Phosphorylase Kinase; domain 1 104 218 - -
Trre9g02121 452 ProSitePatterns Protein kinases ATP-binding region signature. 149 171 IPR017441 GO:0005524
Trre9g02121 452 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 222 424 - -
Trre9g02121 452 MobiDBLite consensus disorder prediction 1 17 - -
Trre9g02121 452 MobiDBLite consensus disorder prediction 1 65 - -
Trre9g02121 452 SMART serkin_6 143 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02121 Trre-Chr9 22444296 22451195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02121 131 406 Trihelix Transcription Factor Family AT1G68690 46.503 5.01e-69 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre9g02121 Pkinase 6.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02121 - - gmx:100818314 658.292