Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02120 ATGGAAATGTCTCACTTTGATTCATACGACGTCGCTTCATCCGTTACTAACAACAACAACAGCAACAACCACACCTCTCATCAAAATCATCATCACTATTTCCTTGACAACATGTATCACAATGGGTGGGGGAGTATTAACGGAAACACAAAGAGCACTGAAGTAGCAGCACCAACACAAGAGCAATCGATTTGGTTTATGGATTCAACAACGCAATCACACGGCGTCGTTAACCACGCGCCGTCACCTAAGCTGAATGATTTTCTCGGTGACAGTCAAGCCGAGTCGCAAGATGATTCTTCTTTAACAAACATGTACGACCACCACCATTACTTCGGTGGGGACCACCACCAGCACCAACAGAATCATCAGGATCTCGTTGTTACTGGTTTTCAAGCTTTTTCAAACAACTCTGGTGGTTCTGAAGTTGATGATTCTGGTTCGATTGGAAAATCATCACAAGCTGCATGTGGAAATGAGTTTGGAACTCATTGTGTTGAGTCTGGGAGTGAGTTTGCTTACTTAGCCGCCGCCGCGGCTGCTGCCGCGGTTAACGGTGCTTTGTCTCTCGCCGTTACTCAGAGCTCCGAGGAGAATGCTGTTGTGGTTGCTGATTCTGATACCTCCAAGAAAATCGCTGATACTTTTGGTCAGCGAACTTCAATTTACCGTGGTGTCACAAGGCATAGATGGACTGGAAGATATGAAGCGCATCTATGGGATAACAGCTCTAGAAGGGAGGGTCAAGCTAGGAAGGGGCGTCAAGTCTATTTGGGTGGATATGACAAGGAGGAAAAGGCCGCAAGATCCTATGATTTGGCTGCCCTAAAGTATTGGGGACCCACTGCTACTACCAACTTCCCTGTTTCCAGTTATGAAAAGGAATTGGAAGATATGAAAGAAGTAACTAAGCAAGAATTTATTGCGTCTCTGCGGAGGAAGAGTAGTGGCTTTTCAAGAGGAGCTTCCATCTACAGGGGTGTTACAAGGCATCACCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGTGTTGCCGGAAACAAAGACCTGTACTTGGGAACATTTGCAACTGAAGAGGAAGCAGCTGAGGCCTATGACATTGCAGCCATAAAATTCCGAGGTGCAAATGCAGTCACAAACTTTGAGATGAACAGATATGATGTGGATGCTATAATGCAGAGTTCTCTTCCAGTTGGTAGTACAGCGAAACGCATGAAGCGCTCTCTTGGTTCTGAACAGAAAGCTTCTGTCACCGGCAATGTTCAGCAGAACAACGCTGAACAGTATGCAGCATGCCTGATTAACAGCAACAAAAGCAGCAACATCAATTTCTCAACCATTCCGCATCAGATGCCAGCTCCACTGAATACAGTCCCTTATGGAATGGTTCCGTATGATTCGAGTCCTACTGCTTATTATCATCATACCCTCTTCCAACATTTCAATTCTGATACCAATGATGGCGCTGCAGAATCTGTTGTGAATTCCGCCAATGCAGCAAATGGTGGACTCAATGCCATGCCTCCAACATCAGCAGCTGAGTTCTACTTATGGCCTAATCAGTCTTATTGA 1572 0.4574 MEMSHFDSYDVASSVTNNNNSNNHTSHQNHHHYFLDNMYHNGWGSINGNTKSTEVAAPTQEQSIWFMDSTTQSHGVVNHAPSPKLNDFLGDSQAESQDDSSLTNMYDHHHYFGGDHHQHQQNHQDLVVTGFQAFSNNSGGSEVDDSGSIGKSSQAACGNEFGTHCVESGSEFAYLAAAAAAAAVNGALSLAVTQSSEENAVVVADSDTSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSSRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSSYEKELEDMKEVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVDAIMQSSLPVGSTAKRMKRSLGSEQKASVTGNVQQNNAEQYAACLINSNKSSNINFSTIPHQMPAPLNTVPYGMVPYDSSPTAYYHHTLFQHFNSDTNDGAAESVVNSANAANGGLNAMPPTSAAEFYLWPNQSY 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02120 523 CDD AP2 221 290 IPR001471 GO:0003700|GO:0006355
Trre9g02120 523 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 82 436 - -
Trre9g02120 523 MobiDBLite consensus disorder prediction 9 28 - -
Trre9g02120 523 MobiDBLite consensus disorder prediction 1 29 - -
Trre9g02120 523 FunFam AP2-like ethylene-responsive transcription factor 323 384 - -
Trre9g02120 523 SUPERFAMILY DNA-binding domain 221 290 IPR016177 GO:0003677
Trre9g02120 523 PRINTS Ethylene responsive element binding protein signature 364 384 IPR001471 GO:0003700|GO:0006355
Trre9g02120 523 PRINTS Ethylene responsive element binding protein signature 223 234 IPR001471 GO:0003700|GO:0006355
Trre9g02120 523 SUPERFAMILY DNA-binding domain 323 383 IPR016177 GO:0003677
Trre9g02120 523 Gene3D AP2/ERF domain 222 290 IPR036955 GO:0003700|GO:0006355
Trre9g02120 523 Gene3D AP2/ERF domain 324 384 IPR036955 GO:0003700|GO:0006355
Trre9g02120 523 ProSiteProfiles AP2/ERF domain profile. 324 382 IPR001471 GO:0003700|GO:0006355
Trre9g02120 523 Pfam AP2 domain 324 374 IPR001471 GO:0003700|GO:0006355
Trre9g02120 523 Pfam AP2 domain 222 280 IPR001471 GO:0003700|GO:0006355
Trre9g02120 523 ProSiteProfiles AP2/ERF domain profile. 222 288 IPR001471 GO:0003700|GO:0006355
Trre9g02120 523 CDD AP2 323 382 IPR001471 GO:0003700|GO:0006355
Trre9g02120 523 SMART rav1_2 324 388 IPR001471 GO:0003700|GO:0006355
Trre9g02120 523 SMART rav1_2 222 294 IPR001471 GO:0003700|GO:0006355
Trre9g02120 523 FunFam AP2-like ethylene-responsive transcription factor ANT 221 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02120 Trre-Chr9 22426214 22431358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02120 66 523 AP2-EREBP Transcription Factor Family AT5G10510 54.426 1.57e-145 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre9g02120 AP2 4.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02120 K09285 - gmx:100775390 575.474