Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02119 ATGGCTCGTGCTACTATTACTAACAACTCTAGTATTAATCATAACTGGCTCTCATTTTCACTCTCACCCATGGAAATGTCTCACTTTGATTCATACGACGTCGCTTCATCCGTTACTAACAACAACAACAGCAACAACCACACCTCTCATCAAAATCATCATCACTATTTCCTTGACAACATGTATCACAATGGGTGGGGGAGTATTAACGGAAACACAAAGAGCACTGAAGTAGCAGCACCAACACAAGAGCAATCGATTTGGTTTATGGATTCAACAACGCAATCACACGGCGTCGTTAACCACGCGCCGTCACCTAAGCTGAATGATTTTCTCGGTGACAGTCAAGCCGAGTCGCAAGATGATTCTTCTTTAACAAACATGTACGACCACCACCATTACTTCGGTGGGGACCACCACCAGCACCAACAGAATCATCAGGATCTCGTTGTTACTGGTTTTCAAGCTTTTTCAAACAACTCTGGTGGTTCTGAAGTTGATGATTCTGGTTCGATTGGAAAATCATCACAAGCTGCATGTGGAAATGAGTTTGGAACTCATTGTGTTGAGTCTGGGAGTGAGTTTGCTTACTTAGCCGCCGCCGCGGCTGCTGCCGCGGTTAACGGTGCTTTGTCTCTCGCCGTTACTCAGAGCTCCGAGGAGAATGCTGTTGTGGTTGCTGATTCTGATACCTCCAAGAAAATCGCTGATACTTTTGGTCAGCGAACTTCAATTTACCGTGGTGTCACAAGGCATAGATGGACTGGAAGATATGAAGCGCATCTATGGGATAACAGCTCTAGAAGGGAGGGTCAAGCTAGGAAGGGGCGTCAAGGTGGATATGACAAGGAGGAAAAGGCCGCAAGATCCTATGATTTGGCTGCCCTAAAGTATTGGGGACCCACTGCTACTACCAACTTCCCTGTTTCCAGTTATGAAAAGGAATTGGAAGATATGAAAGAAGTAACTAAGCAAGAATTTATTGCGTCTCTGCGGAGGAAGAGTAGTGGCTTTTCAAGAGGAGCTTCCATCTACAGGGGTGTTACAAGGCATCACCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGTGTTGCCGGAAACAAAGACCTGTACTTGGGAACATTTGCAACTGAAGAGGAAGCAGCTGAGGCCTATGACATTGCAGCCATAAAATTCCGAGGTGCAAATGCAGTCACAAACTTTGAGATGAACAGATATGATGTGGATGCTATAATGCAGAGTTCTCTTCCAGTTGGTAGTACAGCGAAACGCATGAAGCGCTCTCTTGGTTCTGAACAGAAAGCTTCTGTCACCGGCAATGTTCAGCAGAACAACGCTGAACAGTATGCAGCATGCCTGATTAACAGCAACAAAAGCAGCAACATCAATTTCTCAACCATTCCGCATCAGATGCCAGCTCCACTGAATACAGTCCCTTATGGAATGGTTCCGTATGATTCGAGTCCTACTGCTTATTATCATCATACCCTCTTCCAACATTTCAATTCTGATACCAATGATGGCGCTGCAGAATCTGTTGTGAATTCCGCCAATGCAGCAAATGGTGGACTCAATGCCATGCCTCCAACATCAGCAGCTGAGTTCTACTTATGGCCTAATCAGTCTTATTGA 1632 0.4553 MARATITNNSSINHNWLSFSLSPMEMSHFDSYDVASSVTNNNNSNNHTSHQNHHHYFLDNMYHNGWGSINGNTKSTEVAAPTQEQSIWFMDSTTQSHGVVNHAPSPKLNDFLGDSQAESQDDSSLTNMYDHHHYFGGDHHQHQQNHQDLVVTGFQAFSNNSGGSEVDDSGSIGKSSQAACGNEFGTHCVESGSEFAYLAAAAAAAAVNGALSLAVTQSSEENAVVVADSDTSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSSRREGQARKGRQGGYDKEEKAARSYDLAALKYWGPTATTNFPVSSYEKELEDMKEVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVDAIMQSSLPVGSTAKRMKRSLGSEQKASVTGNVQQNNAEQYAACLINSNKSSNINFSTIPHQMPAPLNTVPYGMVPYDSSPTAYYHHTLFQHFNSDTNDGAAESVVNSANAANGGLNAMPPTSAAEFYLWPNQSY 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02119 543 CDD AP2 244 310 IPR001471 GO:0003700|GO:0006355
Trre9g02119 543 Gene3D AP2/ERF domain 245 310 IPR036955 GO:0003700|GO:0006355
Trre9g02119 543 Gene3D AP2/ERF domain 344 404 IPR036955 GO:0003700|GO:0006355
Trre9g02119 543 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700|GO:0006355
Trre9g02119 543 PRINTS Ethylene responsive element binding protein signature 384 404 IPR001471 GO:0003700|GO:0006355
Trre9g02119 543 ProSiteProfiles AP2/ERF domain profile. 344 402 IPR001471 GO:0003700|GO:0006355
Trre9g02119 543 Pfam AP2 domain 344 394 IPR001471 GO:0003700|GO:0006355
Trre9g02119 543 Pfam AP2 domain 245 300 IPR001471 GO:0003700|GO:0006355
Trre9g02119 543 SUPERFAMILY DNA-binding domain 343 403 IPR016177 GO:0003677
Trre9g02119 543 SUPERFAMILY DNA-binding domain 244 310 IPR016177 GO:0003677
Trre9g02119 543 FunFam AP2-like ethylene-responsive transcription factor 343 404 - -
Trre9g02119 543 FunFam AP2-like ethylene-responsive transcription factor ANT 244 310 - -
Trre9g02119 543 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 458 - -
Trre9g02119 543 ProSiteProfiles AP2/ERF domain profile. 245 308 IPR001471 GO:0003700|GO:0006355
Trre9g02119 543 SMART rav1_2 344 408 IPR001471 GO:0003700|GO:0006355
Trre9g02119 543 SMART rav1_2 245 314 IPR001471 GO:0003700|GO:0006355
Trre9g02119 543 CDD AP2 343 402 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02119 Trre-Chr9 22426145 22431358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02119 89 543 AP2-EREBP Transcription Factor Family AT5G10510 53.861 1.24e-140 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre9g02119 AP2 8.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02119 K09285 - gmx:100775390 581.252