Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02114 ATGGATGCAACACAAAAAGAGAAAATCTATGTTGCTGTTGGTGATGATGCACAAGATGGATTTAATACTTTAAATTGGGCTCTCAAGAAATGGAATTCTCATCCAATTTCCATTGTTATTCTTCATGTGACTCATAACATTTCTAAGGATTATGTTTACACACCGTTTGGAAAACTTCCAGCAAGATCTTTGAATGATGAGAAACTTGAAGCTCTAAGAAAAGATGAGAAAGAGAGAATCAAGAAGTTGTTTTCCAAATATATTGCTTTCTGTGGCAAGGTGTCAGCAGAAATCGTTGAAGTTGAGAAACTCGATGAGTCTATGCAAAAGCGTGTCATAGACTTAATAACTGGATTTGGAATTACCAAATTGGTCATGGGATTTTCATTCATGAAGTCTTCCTTGAAATCAAAAGGTGCTATTAGTGGACTATTCTATGTTCATCAACACAAGCCTAGTTTATGTGAATTATTCATTATATGTGGTGGCAAGCAAGTTTTTCTAAGGGGAAACAATGATGAAAAAATCATGGAAGATGATAGTGGAGTCATGGTTGCTAAAATAAGAGATAAAGTAACTTTTAAAGATTGGCTAGACAAAATGTTTAGTGACAAAACCAATGATTATTCTCAGAATAGATTAAGTGCATCTCCTTCAACAATCAATTTGGTCCAAAATCAATGGGAATTTTATCTTCAAGACATAGAAAATTATTATCAAGAATTGTTATCATCAAATTTGGAAGAAGGAAGCTATGTGCAAGACAATGATGACTCACACATTAGTCCAATTGAGCCACATGTCACTGAATTGAACAGTTCCAATAAGAATACTACAGAAAAAATTGAGATCCTGAAAAATAGACTAAACGAAGCTCACAAAACCATTGAGTTGAAGAGGAAAGAGACTAAGGAAAATATAGAGAGACGCACAAAAGCTGAATGGGCAATTAGCTTATGCAACAGCAGGGCCGATGAAATTGAAGGTAGAATAAGGGAAGAAGTAAGTACAAAGGAGGGCCTAAACAAGGAATTGCAATTGGAGAAAGATCAAAGAGAAGAAATGAGAATGGAGATTGAAGAAAGGAAACGAAGAATGAGTTCATTGGTAGAGCTTCAATCAGAGTTATCAAACAAGCTTCAAATTTCAACAATAGCAAGATCAAGAGCAGAGACACAAGTAGAGAGAGCGGTGAGGGAGAGGGCCGAAATGGTGAGGGAGATAGAGGAGTTAAGGAAGCAGAGAGATGTGTTGAATAGAAGGATCGAGTTTTGCAAGCAAAAGGATGCCATAGGTATGGCCGCGAGATTAAGCGACAATGGAGCGAGTTTTGGGATGAGGGAGTATAGTGAGGTGGAGTTGAGGTTGGCGACCGATAACTTTTCGGAGCGGTTGAGGTTGAAGTCCGGTGGGGATTGGAGTAATGTGTATAGAGGACGCTTCAACCATTCTAGTGTTGCAATTAAGATGTTACCTTCTTTTGCTTCTTTGTCTCGAGAGGATTTTCAATCCAAGATGAGGTTTCTTGGTGATATTAGGCAACCACATCTAGTAGCTATGGTGGGCTTCTGCTCTGAGCCCAAATGCATAATTTTGGAATACATGGGCAACGGAAGCTTACAAGACATGCTATTTTCTAGGCGAAGAAATCGGGGCTTACGATGGCACGATCGAATAAGAATTGCGACGGAAGTTTGCTCGGGCTTGGGCTTTCTTAACTCATCTCCACAAAGGCCCATTCTTCATTGTCATTTGAACCCAGCCCATGTCCTTCTTGACCGTAATTTAGTCGCAAAAATCACGGGCTTTGAGCTTCAAGACTGCGACGACAAGGAATGCGACATTGAGTCGGATTTACGGGCCGTAGGGATTTTGTTGATGCAACTTTTGACCGGAAGAGATTGGGCCGGGCCCATTGAAGAGCCCATGACAATGGATATGGATAGAGAAACATTGGTTAATGTTCTTGATGACATGGCTGGACAATGGCCATTGGATCTAGCAAAAGAGATTGTGGGCCTAGCTATGATTTGCATGTCTGTGAAAAGCAAGCCCAACCTAAATTTAAGCATCGCAAGGGTCTTAGAGGAACTCAATAAGATAAGAAGAAAGGGTGATGAAATAGTTGCAAAGGAAGATAGAAAGGTAATTATTGGTGGATGCATAGATAGAGAGGGCTCTAGTGATGTTCCTAGTGTTTTCCTTTGCCCTATACTTCAGGAGGTAATGAAAAATCCACATGTGGCAGCAGATGGATTTTCATATGAGCTTGAAGCAATAGAACAGTGGTTGCATTCAGGACATGATACATCACCAATGACAAATTTAAGGCTCAAACACACATTACTTACACCAAATTACACACTCCGTTCCTTCCTTGAGGAATGGAAAACCAAACAATCAACTCAAATAGCAAACTAA 2421 0.3953 MDATQKEKIYVAVGDDAQDGFNTLNWALKKWNSHPISIVILHVTHNISKDYVYTPFGKLPARSLNDEKLEALRKDEKERIKKLFSKYIAFCGKVSAEIVEVEKLDESMQKRVIDLITGFGITKLVMGFSFMKSSLKSKGAISGLFYVHQHKPSLCELFIICGGKQVFLRGNNDEKIMEDDSGVMVAKIRDKVTFKDWLDKMFSDKTNDYSQNRLSASPSTINLVQNQWEFYLQDIENYYQELLSSNLEEGSYVQDNDDSHISPIEPHVTELNSSNKNTTEKIEILKNRLNEAHKTIELKRKETKENIERRTKAEWAISLCNSRADEIEGRIREEVSTKEGLNKELQLEKDQREEMRMEIEERKRRMSSLVELQSELSNKLQISTIARSRAETQVERAVRERAEMVREIEELRKQRDVLNRRIEFCKQKDAIGMAARLSDNGASFGMREYSEVELRLATDNFSERLRLKSGGDWSNVYRGRFNHSSVAIKMLPSFASLSREDFQSKMRFLGDIRQPHLVAMVGFCSEPKCIILEYMGNGSLQDMLFSRRRNRGLRWHDRIRIATEVCSGLGFLNSSPQRPILHCHLNPAHVLLDRNLVAKITGFELQDCDDKECDIESDLRAVGILLMQLLTGRDWAGPIEEPMTMDMDRETLVNVLDDMAGQWPLDLAKEIVGLAMICMSVKSKPNLNLSIARVLEELNKIRRKGDEIVAKEDRKVIIGGCIDREGSSDVPSVFLCPILQEVMKNPHVAADGFSYELEAIEQWLHSGHDTSPMTNLRLKHTLLTPNYTLRSFLEEWKTKQSTQIAN 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02114 806 CDD RING-Ubox_WDSUB1-like 731 786 - -
Trre9g02114 806 Pfam U-box domain 730 801 IPR003613 GO:0004842|GO:0016567
Trre9g02114 806 Coils Coil 324 365 - -
Trre9g02114 806 SUPERFAMILY RING/U-box 727 802 - -
Trre9g02114 806 PANTHER OS02G0152300 PROTEIN 9 794 - -
Trre9g02114 806 Gene3D Phosphorylase Kinase; domain 1 435 535 - -
Trre9g02114 806 Coils Coil 268 306 - -
Trre9g02114 806 Coils Coil 387 428 - -
Trre9g02114 806 ProSiteProfiles U-box domain profile. 729 803 IPR003613 GO:0004842|GO:0016567
Trre9g02114 806 SUPERFAMILY Protein kinase-like (PK-like) 445 684 IPR011009 -
Trre9g02114 806 Pfam Protein tyrosine and serine/threonine kinase 471 607 IPR001245 GO:0004672|GO:0006468
Trre9g02114 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 805 IPR013083 -
Trre9g02114 806 Gene3D Transferase(Phosphotransferase) domain 1 536 712 - -
Trre9g02114 806 ProSiteProfiles Protein kinase domain profile. 462 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g02114 806 SMART Ubox_2 733 796 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02114 Trre-Chr9 22344328 22349787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02114 3 806 U-box Gene Family AT5G65500 48.216 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre9g02114 PK_Tyr_Ser-Thr 7.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02114 - - gmx:100786771 1206.43