LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g02114	ATGGATGCAACACAAAAAGAGAAAATCTATGTTGCTGTTGGTGATGATGCACAAGATGGATTTAATACTTTAAATTGGGCTCTCAAGAAATGGAATTCTCATCCAATTTCCATTGTTATTCTTCATGTGACTCATAACATTTCTAAGGATTATGTTTACACACCGTTTGGAAAACTTCCAGCAAGATCTTTGAATGATGAGAAACTTGAAGCTCTAAGAAAAGATGAGAAAGAGAGAATCAAGAAGTTGTTTTCCAAATATATTGCTTTCTGTGGCAAGGTGTCAGCAGAAATCGTTGAAGTTGAGAAACTCGATGAGTCTATGCAAAAGCGTGTCATAGACTTAATAACTGGATTTGGAATTACCAAATTGGTCATGGGATTTTCATTCATGAAGTCTTCCTTGAAATCAAAAGGTGCTATTAGTGGACTATTCTATGTTCATCAACACAAGCCTAGTTTATGTGAATTATTCATTATATGTGGTGGCAAGCAAGTTTTTCTAAGGGGAAACAATGATGAAAAAATCATGGAAGATGATAGTGGAGTCATGGTTGCTAAAATAAGAGATAAAGTAACTTTTAAAGATTGGCTAGACAAAATGTTTAGTGACAAAACCAATGATTATTCTCAGAATAGATTAAGTGCATCTCCTTCAACAATCAATTTGGTCCAAAATCAATGGGAATTTTATCTTCAAGACATAGAAAATTATTATCAAGAATTGTTATCATCAAATTTGGAAGAAGGAAGCTATGTGCAAGACAATGATGACTCACACATTAGTCCAATTGAGCCACATGTCACTGAATTGAACAGTTCCAATAAGAATACTACAGAAAAAATTGAGATCCTGAAAAATAGACTAAACGAAGCTCACAAAACCATTGAGTTGAAGAGGAAAGAGACTAAGGAAAATATAGAGAGACGCACAAAAGCTGAATGGGCAATTAGCTTATGCAACAGCAGGGCCGATGAAATTGAAGGTAGAATAAGGGAAGAAGTAAGTACAAAGGAGGGCCTAAACAAGGAATTGCAATTGGAGAAAGATCAAAGAGAAGAAATGAGAATGGAGATTGAAGAAAGGAAACGAAGAATGAGTTCATTGGTAGAGCTTCAATCAGAGTTATCAAACAAGCTTCAAATTTCAACAATAGCAAGATCAAGAGCAGAGACACAAGTAGAGAGAGCGGTGAGGGAGAGGGCCGAAATGGTGAGGGAGATAGAGGAGTTAAGGAAGCAGAGAGATGTGTTGAATAGAAGGATCGAGTTTTGCAAGCAAAAGGATGCCATAGGTATGGCCGCGAGATTAAGCGACAATGGAGCGAGTTTTGGGATGAGGGAGTATAGTGAGGTGGAGTTGAGGTTGGCGACCGATAACTTTTCGGAGCGGTTGAGGTTGAAGTCCGGTGGGGATTGGAGTAATGTGTATAGAGGACGCTTCAACCATTCTAGTGTTGCAATTAAGATGTTACCTTCTTTTGCTTCTTTGTCTCGAGAGGATTTTCAATCCAAGATGAGGTTTCTTGGTGATATTAGGCAACCACATCTAGTAGCTATGGTGGGCTTCTGCTCTGAGCCCAAATGCATAATTTTGGAATACATGGGCAACGGAAGCTTACAAGACATGCTATTTTCTAGGCGAAGAAATCGGGGCTTACGATGGCACGATCGAATAAGAATTGCGACGGAAGTTTGCTCGGGCTTGGGCTTTCTTAACTCATCTCCACAAAGGCCCATTCTTCATTGTCATTTGAACCCAGCCCATGTCCTTCTTGACCGTAATTTAGTCGCAAAAATCACGGGCTTTGAGCTTCAAGACTGCGACGACAAGGAATGCGACATTGAGTCGGATTTACGGGCCGTAGGGATTTTGTTGATGCAACTTTTGACCGGAAGAGATTGGGCCGGGCCCATTGAAGAGCCCATGACAATGGATATGGATAGAGAAACATTGGTTAATGTTCTTGATGACATGGCTGGACAATGGCCATTGGATCTAGCAAAAGAGATTGTGGGCCTAGCTATGATTTGCATGTCTGTGAAAAGCAAGCCCAACCTAAATTTAAGCATCGCAAGGGTCTTAGAGGAACTCAATAAGATAAGAAGAAAGGGTGATGAAATAGTTGCAAAGGAAGATAGAAAGGTAATTATTGGTGGATGCATAGATAGAGAGGGCTCTAGTGATGTTCCTAGTGTTTTCCTTTGCCCTATACTTCAGGAGGTAATGAAAAATCCACATGTGGCAGCAGATGGATTTTCATATGAGCTTGAAGCAATAGAACAGTGGTTGCATTCAGGACATGATACATCACCAATGACAAATTTAAGGCTCAAACACACATTACTTACACCAAATTACACACTCCGTTCCTTCCTTGAGGAATGGAAAACCAAACAATCAACTCAAATAGCAAACTAA	2421	0.3953	MDATQKEKIYVAVGDDAQDGFNTLNWALKKWNSHPISIVILHVTHNISKDYVYTPFGKLPARSLNDEKLEALRKDEKERIKKLFSKYIAFCGKVSAEIVEVEKLDESMQKRVIDLITGFGITKLVMGFSFMKSSLKSKGAISGLFYVHQHKPSLCELFIICGGKQVFLRGNNDEKIMEDDSGVMVAKIRDKVTFKDWLDKMFSDKTNDYSQNRLSASPSTINLVQNQWEFYLQDIENYYQELLSSNLEEGSYVQDNDDSHISPIEPHVTELNSSNKNTTEKIEILKNRLNEAHKTIELKRKETKENIERRTKAEWAISLCNSRADEIEGRIREEVSTKEGLNKELQLEKDQREEMRMEIEERKRRMSSLVELQSELSNKLQISTIARSRAETQVERAVRERAEMVREIEELRKQRDVLNRRIEFCKQKDAIGMAARLSDNGASFGMREYSEVELRLATDNFSERLRLKSGGDWSNVYRGRFNHSSVAIKMLPSFASLSREDFQSKMRFLGDIRQPHLVAMVGFCSEPKCIILEYMGNGSLQDMLFSRRRNRGLRWHDRIRIATEVCSGLGFLNSSPQRPILHCHLNPAHVLLDRNLVAKITGFELQDCDDKECDIESDLRAVGILLMQLLTGRDWAGPIEEPMTMDMDRETLVNVLDDMAGQWPLDLAKEIVGLAMICMSVKSKPNLNLSIARVLEELNKIRRKGDEIVAKEDRKVIIGGCIDREGSSDVPSVFLCPILQEVMKNPHVAADGFSYELEAIEQWLHSGHDTSPMTNLRLKHTLLTPNYTLRSFLEEWKTKQSTQIAN	806

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g02114	806	CDD	RING-Ubox_WDSUB1-like	731	786	-	-
	Trre9g02114	806	Pfam	U-box domain	730	801	IPR003613	GO:0004842\|GO:0016567
	Trre9g02114	806	Coils	Coil	324	365	-	-
	Trre9g02114	806	SUPERFAMILY	RING/U-box	727	802	-	-
	Trre9g02114	806	PANTHER	OS02G0152300 PROTEIN	9	794	-	-
	Trre9g02114	806	Gene3D	Phosphorylase Kinase; domain 1	435	535	-	-
	Trre9g02114	806	Coils	Coil	268	306	-	-
	Trre9g02114	806	Coils	Coil	387	428	-	-
	Trre9g02114	806	ProSiteProfiles	U-box domain profile.	729	803	IPR003613	GO:0004842\|GO:0016567
	Trre9g02114	806	SUPERFAMILY	Protein kinase-like (PK-like)	445	684	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g02114	Trre-Chr9	22344328	22349787	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g02114	3	806	U-box Gene Family	AT5G65500	48.216	0.0	741

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Trre9g02114		PK_Tyr_Ser-Thr	7.1e-20	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g02114	-		-	gmx:100786771	1206.43

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