Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02081 ATGGCTCGTGAGAAGATTCAGATAAAGAAGATCGAGAATACAACGGCAAGGCAAGTGACTTTTTCAAAGAGAAGAAGAGGGTTGGTGAAAAAAGCTGAAGAACTCTCGGTTCTTTGTGATGCTGATGTTGCTCTTATCATTTTCTCTTCTACTGGGAAACTCTTTGAATACTCCAACTTAAGCATGAGGGAAATACTGGAAAGACATCATTTACACTCAAAGAACCTTGCAAAGCTGGAAGAACCGTCTCTCGAGTTACAGCTAGTTGAAAACAGTAACTGCTCAAGATTGAGCAAGGAAATTGCAGAGAAGAGCCATCAACTAAGGCAGATGAGGGGTGAGGATCTTGAAGGTTTGAATGTTGAACAATTACAACAATTGGAGAGGTCTCTTGAAATTGGGTTGGGCCGTGTAATAGAAAACAAGGGAGAGAAGATCATGATGGAGATCAATGATCTCCAAAGAAAGGGAAGACAACTGATGGAAGAGAACGACCGACTAAAGCGACATGTTGCAGGCATAGTGGTTAATGGTAAAATGGTTGGAGGAGTTGAATCTGAAAATGTGGTTACTGAAGAAGGCCAATCCTCAGGATCTGTCACCAATGTTTACAACTCTACTGGTCCTCCCCAGGACTATGAGAGCTCAGACACATCGCTCAAATTGGGGCTTCCATATGCCGGCTGA 687 0.4279 MAREKIQIKKIENTTARQVTFSKRRRGLVKKAEELSVLCDADVALIIFSSTGKLFEYSNLSMREILERHHLHSKNLAKLEEPSLELQLVENSNCSRLSKEIAEKSHQLRQMRGEDLEGLNVEQLQQLERSLEIGLGRVIENKGEKIMMEINDLQRKGRQLMEENDRLKRHVAGIVVNGKMVGGVESENVVTEEGQSSGSVTNVYNSTGPPQDYESSDTSLKLGLPYAG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02081 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre9g02081 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre9g02081 228 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre9g02081 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre9g02081 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre9g02081 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre9g02081 228 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Trre9g02081 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Trre9g02081 228 MobiDBLite consensus disorder prediction 189 218 - -
Trre9g02081 228 MobiDBLite consensus disorder prediction 189 228 - -
Trre9g02081 228 Coils Coil 94 114 - -
Trre9g02081 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre9g02081 228 Coils Coil 150 170 - -
Trre9g02081 228 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Trre9g02081 228 FunFam Transcription factor, MADS-box 13 83 - -
Trre9g02081 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre9g02081 228 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Trre9g02081 228 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02081 Trre-Chr9 21910228 21916620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02081 1 228 MADS-box Gene Family AT2G22540 68.750 1.70e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre9g02081 K-box 1.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02081 - - gmx:100789126 373.629