Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02080 ATGGCTGAAATTTTTGACAGTGCTACATCCAATCTTTTATGTTCTGAGAACAATAGCACATGTTTTGATGATGATTTGGAATTTAATGATGTTTTTGATGGTTCTGGAATCTCACCTTCATGGGATTACACAAACCTTAACTTAGACAACGTTGGATCGGAATCTGTTGGTTGTTTTTTTGCACAGAGTGAGGAAATTGTGAAGGTTATGGTTGAGAAAGAGAAGGATCATTTGCCAAGGGATGATTACTTGATGAGATTGCGTAGTGGTGATTTGGATTTGAGTGTTAGAAGAGAAGCTCTTGATTGGATTTGGAAGGCTCATGCTTACTATGGATTTGGACCCTTAAGCCTTTGCCTATCTGTGAATTACTTGGATCGATTCCTATCGGTTTATCAATTACCGAAAGGTGTGAGTTGGACTGTGCAATTGTTAGCCGTAGCTTGCTTTTCGCTTGCGGCTAAAATGGAGGAAGTAAAAGTGCCTCATTCTGTGGATTTGCAGGTTGGAGAACCAAGGTTTATATTCCATGCTAAAACAATTCAAAGAATGGAACTAATGGTATTAAGCACATTAGGATGGAAAATGCAGGCTTTAACTCCTTGTTCCTTCATAGACTATTTCCTTGCTAAGATCAGTTGCGAGGAGCATGCGGAAAAGTCATCGATTGCAAGATCAGTACAGCTTATCCTTAACATAATCAAGGGTATTGACTTCTTGGAATTCAGATATTCTGAAATCGCTGCAGCGGTGGCAATTTCTGTGTTAAAGGAGGTTCCAGTACAAGAAGTTGATAAGGCCATAACTGATTTTGTCATTGTAGAAAAGGATAGAGTTCTAAAGTGTGTTGAAATGATAAAAGATCTTTCCTTGATCATGGTTGGTGCTACTAAGCATACAACATTTGTGCCTCAAAGCCCTATTGGGGTGCTTGATACAGGTTGCATGAGTTTTAAGAGTGATGAATTAACAAATGGGTCATGTCCATATTCTTTGCATAATAGTCCAAATACTAAAAGGAGAAAAATTGATGGACCTTCCAATGGATCTTCACAATCATGA 1062 0.3842 MAEIFDSATSNLLCSENNSTCFDDDLEFNDVFDGSGISPSWDYTNLNLDNVGSESVGCFFAQSEEIVKVMVEKEKDHLPRDDYLMRLRSGDLDLSVRREALDWIWKAHAYYGFGPLSLCLSVNYLDRFLSVYQLPKGVSWTVQLLAVACFSLAAKMEEVKVPHSVDLQVGEPRFIFHAKTIQRMELMVLSTLGWKMQALTPCSFIDYFLAKISCEEHAEKSSIARSVQLILNIIKGIDFLEFRYSEIAAAVAISVLKEVPVQEVDKAITDFVIVEKDRVLKCVEMIKDLSLIMVGATKHTTFVPQSPIGVLDTGCMSFKSDELTNGSCPYSLHNSPNTKRRKIDGPSNGSSQS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02080 353 ProSitePatterns Cyclins signature. 97 128 IPR006671 -
Trre9g02080 353 Pfam Cyclin, N-terminal domain 65 196 IPR006671 -
Trre9g02080 353 Gene3D - 69 286 - -
Trre9g02080 353 FunFam D6-type cyclin 195 284 - -
Trre9g02080 353 Pfam Cyclin, C-terminal domain 200 292 IPR004367 -
Trre9g02080 353 MobiDBLite consensus disorder prediction 329 353 - -
Trre9g02080 353 SMART Cyclin_C_2 199 322 IPR004367 -
Trre9g02080 353 CDD CYCLIN_AtCycD-like_rpt2 200 286 - -
Trre9g02080 353 PANTHER CYCLINS 62 287 IPR039361 -
Trre9g02080 353 FunFam D2/4-type cyclin 80 194 - -
Trre9g02080 353 SUPERFAMILY Cyclin-like 57 196 IPR036915 -
Trre9g02080 353 CDD CYCLIN_AtCycD-like_rpt1 96 194 - -
Trre9g02080 353 Gene3D - 80 197 - -
Trre9g02080 353 SMART cyclin_7 102 190 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02080 Trre-Chr9 21828886 21830965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02080 61 259 Core Cell Cycle Gene Families AT5G65420 62.189 1.26e-87 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02080 K18810 - gmx:100794010 482.256