Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02072 ATGGGAAAGGAGGGTAAGATCGGTGTAGTTGTTGGTGCGGTGATATATGACATTAGAGTTTATGAAGTACCTGCAATGAAGGTAGCTACTCTAAGGTTCACAGAAACTGCCAGAGCTAGAATTGAGAAGGCTGGGGGAATGTCTCACCTTACCTTTGATCAGCTGGCTCTTAGAGCTCCTTTAGGCCAGAACACGGTATGTATTTTAATGCTACTATTGTCTGCTTATTGCAATTCTAGGTGTTATGGTTTTGTCGAAATTGCAGTACTTTTATTAGTTGGGTTATTTACTTAA 294 0.4048 MGKEGKIGVVVGAVIYDIRVYEVPAMKVATLRFTETARARIEKAGGMSHLTFDQLALRAPLGQNTVCILMLLLSAYCNSRCYGFVEIAVLLLVGLFT 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02072 97 Gene3D - 1 80 - -
Trre9g02072 97 Pfam Ribosomal protein 60S L18 and 50S L18e 3 67 IPR021131 -
Trre9g02072 97 PANTHER 60S RIBOSOMAL PROTEIN L18 2 68 IPR000039 GO:0003735|GO:0005840|GO:0006412
Trre9g02072 97 SUPERFAMILY Ribosomal proteins L15p and L18e 3 67 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02072 Trre-Chr9 21559854 21560461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02072 2 80 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 68.354 3.01e-29 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02072 K02883 - csin:114321737 106.301