Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02069 ATGGATTTTGAAGATCAAGAGGAACATGAGGAGGAAGAGTTATGTGCGAGTTACGACTCGTTACCTAACTCATCATCCCGAGTTAAGATGCCAGGTGGAACTGAACCTATCATGATGACTCAGCCACTCAGAAACATCATCCTTAACAACAACAACAACAACGGAAACAGTAACATCGGTGTCGGAAACGGAAAATCAAGGTATAGAGAATGTTTAAAGAATCATGCTGTCGGAATTGGTGGTCATGCTCTCGACGGTTGCGGCGAGTTTATGCCAGCAGGAAATGAAGGAAGTTTGGAATCGTTAAAATGTGCTGCTTGTAACTGTCACCGTAATTTCCACCGCAAAGAGACAACGGATATCCCTGGTGGTGACCCTTTTTTGTTGACACATCATAGTCATCACCCACCACCTCCGCCGCAGTTTGCGGCTTATTACCGAACTCCAGCTGGGTATTTACACGTTTCTGGACAGCAGAGGACGGGGACACTAGCTCTGCCGTCAACTTCCGGTGGAGGTGGAGGGACACAAAGTACGAGAGAGGAGCAAGAAGATGTTTCGAATCCGAGTGGTGGTGGATCGAGTAAGAAGAGACATAGAACAAAATTCACACCGGAGCAGAAAGATAAGATGTTGGAATTAGCTGAGAAATTGGGTTGGAGAATTCAGAAACATGATGAAGGTTTGGTACAAGAGTTTTGCAATGAAAGTGGTGTTAAGCGTCATGTTCTCAAAGTTTGGATGCATAACAACAAACACACTCTTGGTAAGAAGCCCTAG 780 0.4513 MDFEDQEEHEEEELCASYDSLPNSSSRVKMPGGTEPIMMTQPLRNIILNNNNNNGNSNIGVGNGKSRYRECLKNHAVGIGGHALDGCGEFMPAGNEGSLESLKCAACNCHRNFHRKETTDIPGGDPFLLTHHSHHPPPPPQFAAYYRTPAGYLHVSGQQRTGTLALPSTSGGGGGTQSTREEQEDVSNPSGGGSSKKRHRTKFTPEQKDKMLELAEKLGWRIQKHDEGLVQEFCNESGVKRHVLKVWMHNNKHTLGKKP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02069 259 NCBIfam homeobox domain, ZF-HD class 196 252 IPR006455 -
Trre9g02069 259 Pfam ZF-HD protein dimerisation region 66 118 IPR006456 -
Trre9g02069 259 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 117 IPR006456 -
Trre9g02069 259 MobiDBLite consensus disorder prediction 162 194 - -
Trre9g02069 259 MobiDBLite consensus disorder prediction 1 27 - -
Trre9g02069 259 Gene3D - 180 256 - -
Trre9g02069 259 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 255 - -
Trre9g02069 259 MobiDBLite consensus disorder prediction 162 205 - -
Trre9g02069 259 SUPERFAMILY Homeodomain-like 185 257 IPR009057 -
Trre9g02069 259 FunFam Zinc-finger homeodomain protein 2 182 257 - -
Trre9g02069 259 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 67 117 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02069 Trre-Chr9 21539418 21540197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02069 64 255 ZF-HD Transcription Factor Family AT4G24660 54.167 7.68e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre9g02069 ZF-HD_dimer 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02069 - - gmx:100808910 303.138