Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02068 ATGGTTTTAATGGATTCTTATGGTGGTAGAATTCATGCTACTGTTAAAACAACTCTTATTTATAAATTTAAGGATGAGCTAATAGAGGGAAAAGTTTATACTTTTGAAAAGATTGGAGTCTCACCTAATGTTGGAGCTTATCGTACTACTCATCACAGTTTTAAGTTAAATTTCAAAGCCACTACATTGATTCAAAGACTTTTTAATCAAGACATTGTTAGATCTCCATATAACTTTGTTCCAATTAGGCAGATTGTAGGAGACTCTTATGACATTGATTTCTTAGTTGATGTTATTGGAATATTGATTGATGTTGGTCATGAGCGTGAAATTAATGATCAAGATGGAACACCCACAAAAGTGAATGTCATTGAAATAGAGCAAGATGGGAGTAAAATTCAATGTTATTTGTATGGGGCATATGTTGATGTACTTAATGCTTTTCTTGAAGCTGGACATGTCCAAAATGTTGCTGTCGTTATGATGTTTGCCAAGGCCGTAGCTTTTCAAGGCAAGATTCATATTCAAAACTGTCTCAACTCTACCTATTTGTCCTTTAACCCTTTCTAA 570 0.3351 MVLMDSYGGRIHATVKTTLIYKFKDELIEGKVYTFEKIGVSPNVGAYRTTHHSFKLNFKATTLIQRLFNQDIVRSPYNFVPIRQIVGDSYDIDFLVDVIGILIDVGHEREINDQDGTPTKVNVIEIEQDGSKIQCYLYGAYVDVLNAFLEAGHVQNVAVVMMFAKAVAFQGKIHIQNCLNSTYLSFNPF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02068 189 Gene3D - 1 66 IPR012340 -
Trre9g02068 189 SUPERFAMILY Nucleic acid-binding proteins 77 182 IPR012340 -
Trre9g02068 189 Gene3D - 70 189 IPR012340 -
Trre9g02068 189 Pfam Domain of unknown function DUF223 1 95 IPR003871 -
Trre9g02068 189 CDD RPA1_DBD_B_like 97 188 - -
Trre9g02068 189 CDD RPA1_DBD_A_like 1 64 - -
Trre9g02068 189 SUPERFAMILY Nucleic acid-binding proteins 1 68 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02068 Trre-Chr9 21524240 21525071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02068 3 188 Core DNA Replication Machinery Family AT2G06510 23.037 2.32e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02068 - - tpra:123915358 240.736