Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02065 ATGACTGACTCTGCAGTTGTCCTTGCCAAATCTGGGTTATGTGTTGAGAAGACAAAAGTTGCTGAAATAACCAGCGGAAGAGTCGATTTCGAACTCTGTGTTCGGGTGATCAATATCTGGACAACTCCTGATCGTGTTAATCCCGCTGACATTGGGGCAATTCATATGATTTTTATTGATAAAGATCGTGGGAAGATTCAGGCAACCATACGAAAATATTTAATATCTCTGTTTAAGGATCGGATTGAGTATGTGTGTGCTTATGTATTTGAAAAGTTTATGGTTGCTAAGAACGATGTTACATTCAGATGTACTTCCCATAAATATAAACTAAATTTCATGTGCGGAACTAAAGTGTGGAAATTGACAGCAAATGATATTCCCATGAACCATTTTGATTTCATGCCTTTCCAAGAGATTATCTCGAAGACTAACGAGGATCAAATGCTAGATGCTATCGGCCATGTTGTTGAGAAGAATGCCGTGAGAGAGACTGAAAAAAATGGAAAGAAAAGTAAGGTCCTGGATATAACCCTTGAAGATTTAGAGGGTGATAGGGTTCATTGCACTCTCTGGGATGAGTTTGCTGAAAGAATGCATCGATTTCTGGATGGCCATGATTCGTCTCTGCCGGTGGTTATTATACTTCAACAGTGCAAGCTCAAGAAATTTCTTGGTGCTATGGGGATTTCCAACTCCTTCTATGGATCCAAGCTATTTCTGAATGCTCGGATACCTGAGGTTACTGATTATATAGATAGGATGAACATGGCCAATGTGGAATTAACTCAGGTGAAGTGCGTTGGTTCTGTGCTGGCTGTGGCGTGCAAAATTGACACTGATTTGAGCTGGTTCTATCAGGCCTGTAGCAGATGTGCATCCAGGATCAATTACATTAGGGGTCAACTTTACTGCGAGAAGTGCAAGATCTGCTGGATGCAATGA 945 0.4085 MTDSAVVLAKSGLCVEKTKVAEITSGRVDFELCVRVINIWTTPDRVNPADIGAIHMIFIDKDRGKIQATIRKYLISLFKDRIEYVCAYVFEKFMVAKNDVTFRCTSHKYKLNFMCGTKVWKLTANDIPMNHFDFMPFQEIISKTNEDQMLDAIGHVVEKNAVRETEKNGKKSKVLDITLEDLEGDRVHCTLWDEFAERMHRFLDGHDSSLPVVIILQQCKLKKFLGAMGISNSFYGSKLFLNARIPEVTDYIDRMNMANVELTQVKCVGSVLAVACKIDTDLSWFYQACSRCASRINYIRGQLYCEKCKICWMQ 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02065 314 Gene3D - 16 121 IPR012340 -
Trre9g02065 314 PANTHER OS03G0429900 PROTEIN 17 253 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre9g02065 314 Pfam Domain of unknown function DUF223 56 150 IPR003871 -
Trre9g02065 314 SUPERFAMILY Nucleic acid-binding proteins 17 122 IPR012340 -
Trre9g02065 314 SUPERFAMILY Nucleic acid-binding proteins 131 257 IPR012340 -
Trre9g02065 314 CDD RPA1_DBD_A_like 32 119 - -
Trre9g02065 314 CDD RPA1_DBD_B_like 151 255 - -
Trre9g02065 314 Gene3D - 125 265 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02065 Trre-Chr9 21212522 21214190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02065 58 248 Core DNA Replication Machinery Family AT2G06510 28.934 5.28e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02065 - - tpra:123896123 410.223